RNA id: TU144414


Basic Information

Item Value
RNA id TU144414
length 1555
RNA type TUCP
GC content 0.44
exon number 1
gene id G115299
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5949463 ~ 5951017 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gctttttatcaATTCCAAGCATTGgtattcaaatacattcagTCAATATTAACCCCTCAACCCTTGTCATAGGTTTCCCTTCATGTACCATCTACttgataattataattagtGTTGGAAATATGCATGCTGTGCAGAGAAAGGCAAGGAAAGGGACCACGACTTGTACAAACTAATTTGTTACATGTgaaaaaatttgaaaaaaagttttgaaataaaataactgttatGAATGTTGTCCTACACAAGAACATGGCAGCAAGCAGAGTAATGGAAAAGAACAGCCTAATGGTACAAGATGAAAAGGCAATATACTTAATGAATACtttatgaatgtttttactggggaagagaaaacataacattttgcaaATTGAAGAGGTTTTTACTGCCCTCAGTAGGAATATGCGAGACCTCGCTCATGTGCATTGGGGGATTTGTGTTGCTTCTTTCCTGATGTGTTTCCTCATTTAGCTCCTATCAGAGAAAGAACTGGATTGTCTTGAATTTTCCTCCTGCCCAGGTGTATCCAGCTGCTGCTTCCTTTCGGCTCCTCTTTTCCTCTTGAGATCACCTCAGATGTAAAACCATCCTCTCCCAGCACACGTACCCAGCAGATATTCAGTCTGATGACCCTATTTGCATATGTTCCTGCTGTCTGCAAAATCATCTCACAGCACATTGAGCTAACCTAACACTGACCTGGAATCCATTTGTCTTTGTGCTACTTTGCGCTATATTCACCGGTCTCCCATGAATTGATTACCACTGTGCTCAATGCAGGATTCCCGCAGAAGACTTTAGTGGCTTCCTCAGATTATTTCAGTCATGGCAATGGTGTCATTTCAGTCCTGTATTGAAAGAGTGACACTGTCTAACACACCACAAAGCCATGGAGCAAGATCACGCCCCAGCACTGGTCTTGGCCACAGCAAGAAGCTTCACACCCGAGACCAACCGGCCCTGAAAGATGCCATACCTTCTCTGGGTAGTTTGACCCTTGGGAGGCAGGTGGACAACGAGAGCATGAGGATACGTGATGTGGATTCAGTCACACCAGCATCCCAGGCTTGGGCTGCTAGGCCAGACCACTGTCTGTGGGTAACCGGCTGCAGACTCGGGAACATTTTGCTTTGCGGTTGAAGGACTGTGCCAGCAGTGAAGAGCATGTCAAGAACGCTCAGAAGCTGCTCTGAACACACGAGAGCAGAACAACCGCTGTTCCTGCTCCTCCTACACAAGCTGCACTCCTCCAGCGCGCCAACGACAATGGGCATCACCGGGCACAGACCCTGCAGTCTGGTTCTCTTCCAGGATctgtattatcatcatcaaaaGCAACGACCATTTGAGTTTGGTATTTGAATAGCAAGCATTTCTCTGAAACCTGCAACAGCTAATGGCTGCCTGCTGGCTCTGCACTGTGAGACTTTTTTAGTCCTCTGtcacactttttgtttgtactGTTGTATACGatttgtcatttgtgttttcCTATATGACAGTTTGTTGTCCAGTATGATATTTGTTGGCTGTCCTGTACCACaaactgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144281 lncRNA upstream 604516 5344487 ~ 5344947 (+) True G115201
TU144260 lncRNA upstream 631538 5316453 ~ 5317925 (+) True G115188
TU144143 lncRNA upstream 848525 5095148 ~ 5100938 (+) True G115099
TU144096 lncRNA upstream 1135044 4814018 ~ 4814419 (+) True G115061
TU144007 lncRNA upstream 1355618 4593460 ~ 4593845 (+) True G114985
TU144447 lncRNA downstream 95013 6046030 ~ 6046534 (+) True G115331
TU144484 lncRNA downstream 206942 6157959 ~ 6160488 (+) False AMCG00018272
TU144512 lncRNA downstream 574702 6525719 ~ 6588409 (+) True G115379
TU144557 lncRNA downstream 667161 6618178 ~ 6620097 (+) True G115419
TU144586 lncRNA downstream 703105 6654122 ~ 6678353 (+) True G115439
AMCG00018267 mRNA upstream 871 5935039 ~ 5948592 (+) True AMCG00018267
AMCG00018266 mRNA upstream 44976 5890174 ~ 5904487 (+) True AMCG00018266
AMCG00018260 mRNA upstream 171472 5777776 ~ 5777991 (+) True AMCG00018260
AMCG00018261 mRNA upstream 199041 5748069 ~ 5750422 (+) True AMCG00018261
AMCG00018259 mRNA upstream 210639 5688305 ~ 5738824 (+) True AMCG00018259
AMCG00018268 mRNA downstream 1252 5952269 ~ 5963749 (+) True AMCG00018268
AMCG00018271 mRNA downstream 20797 5971814 ~ 6015227 (+) True AMCG00018271
AMCG00018270 mRNA downstream 85063 6036080 ~ 6040179 (+) True AMCG00018270
AMCG00018269 mRNA downstream 109944 6060961 ~ 6061581 (+) True AMCG00018269
AMCG00018273 mRNA downstream 174483 6125500 ~ 6125769 (+) True AMCG00018273
TU144084 other upstream 1185558 4761518 ~ 4763905 (+) True G115049
TU144009 other upstream 1345474 4601490 ~ 4603989 (+) False AMCG00018216
TU143856 other upstream 1756349 4191717 ~ 4193114 (+) False AMCG00018196
TU143458 other upstream 3301689 2640846 ~ 2647774 (+) True G114551
TU143421 other upstream 3381928 2566084 ~ 2567535 (+) True G114518
TU144781 other downstream 1942610 7893627 ~ 7894449 (+) True G115590
TU144853 other downstream 2168761 8119778 ~ 8122171 (+) True G115648
TU145016 other downstream 2742347 8693364 ~ 8694719 (+) True G115789
TU145182 other downstream 3248640 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 3288794 9239811 ~ 9241815 (+) True AMCG00018360

Expression Profile