RNA id: TU144435


Basic Information

Item Value
RNA id TU144435
length 635
RNA type TUCP
GC content 0.48
exon number 1
gene id G115320
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5950421 ~ 5951055 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccctttaatatgtaaatacaagCCTActaaagaaagacagacagtttGTGGTACAGGACAGCCAACAAATATCATACTGGACAACAAACTGTCATATAGgaaaacacaaatgacaaatCGTATACAACagtacaaacaaaaagtgtgaCAGAGGACTAAAAAAGTCTCACAGTGCAGAGCCAGCAGGCAGCCATTAGCTGTTGCAGGTTTCAGAGAAATGCTTGCTATTCAAATACCAAACTCAAATGGTCGTTGCttttgatgatgataatacagATCCTGGAAGAGAACCAGACTGCAGGGTCTGTGCCCGGTGATGCCCATTGTCGTTGGCGCGCTGGAGGAGTGCAGCTTGTGTAGGAGGAGCAGGAACAGCGGTTGTTCTGCTCTCGTGTGTTCAGAGCAGCTTCTGAGCGTTCTTGACATGCTCTTCACTGCTGGCACAGTCCTTCAACCGCAAAGCAAAATGTTCCCGAGTCTGCAGCCGGTTACCCACAGACAGTGGTCTGGCCTAGCAGCCCAAGCCTGGGATGCTGGTGTGACTGAATCCACATCACGTATCCTCATGCTCTCGTTGTCCACCTGCCTCCCAAGGGTCAAACTACCCAGAGAAGGTATGGCATCTTTCAGGGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144388 lncRNA downstream 196399 5750285 ~ 5754022 (-) False G115279
TU144390 lncRNA downstream 196500 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA downstream 196500 5750285 ~ 5753921 (-) False G115279
TU144386 lncRNA downstream 200378 5749783 ~ 5750043 (-) True G115278
TU144385 lncRNA downstream 202062 5747458 ~ 5748359 (-) True G115277
TU144448 lncRNA upstream 94975 6046030 ~ 6046618 (-) True G115332
TU144532 lncRNA upstream 266473 6217528 ~ 6219216 (-) True G115395
TU144711 lncRNA upstream 1050747 7001802 ~ 7002005 (-) True G115534
TU144760 lncRNA upstream 1783042 7734097 ~ 7734384 (-) True G115577
TU144762 lncRNA upstream 1790919 7741974 ~ 7742210 (-) True G115579
AMCG00018263 mRNA downstream 64421 5881546 ~ 5886000 (-) True AMCG00018263
AMCG00018265 mRNA downstream 141578 5794517 ~ 5808843 (-) True AMCG00018265
AMCG00018264 mRNA downstream 165521 5783076 ~ 5784900 (-) True AMCG00018264
AMCG00018262 mRNA downstream 204717 5741029 ~ 5745704 (-) True AMCG00018262
AMCG00018258 mRNA downstream 337946 5608590 ~ 5612475 (-) True AMCG00018258
AMCG00018274 mRNA upstream 117248 6068303 ~ 6124832 (-) True AMCG00018274
AMCG00018289 mRNA upstream 177658 6128713 ~ 6155791 (-) True AMCG00018289
AMCG00018292 mRNA upstream 207225 6158280 ~ 6182812 (-) True AMCG00018292
AMCG00018286 mRNA upstream 268918 6219973 ~ 6231007 (-) True AMCG00018286
AMCG00018293 mRNA upstream 358314 6309369 ~ 6464857 (-) True AMCG00018293
TU144300 other downstream 583667 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 645992 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 646033 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 662548 5286386 ~ 5287873 (-) True G115174
TU144068 other downstream 1298809 4646577 ~ 4651612 (-) False AMCG00018220
TU144568 other upstream 667420 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 687287 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 1792163 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 3288757 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 3967991 9919046 ~ 9924582 (-) True G116165

Expression Profile