RNA id: TU144448


Basic Information

Item Value
RNA id TU144448
length 589
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G115332
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6046030 ~ 6046618 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatatatatatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaacaacaacaaaaaaatccagaaaaacgcatttcaaaaaagttataaattgatttgcattctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaataactgtcagtctccctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagatcggtgaggaatcagcccagaactacatgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatcctgcagcgcccgcaaggtccccctgctcaagaaagcacatgtacaggcccgtctgaagtttgccaacatctgaatgagacgtcagatgagaccaaaatcgagctctttggcatcaactcaagtCGCCGTGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144388 lncRNA downstream 292008 5750285 ~ 5754022 (-) False G115279
TU144390 lncRNA downstream 292109 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA downstream 292109 5750285 ~ 5753921 (-) False G115279
TU144386 lncRNA downstream 295987 5749783 ~ 5750043 (-) True G115278
TU144385 lncRNA downstream 297671 5747458 ~ 5748359 (-) True G115277
TU144532 lncRNA upstream 170910 6217528 ~ 6219216 (-) True G115395
TU144711 lncRNA upstream 955184 7001802 ~ 7002005 (-) True G115534
TU144760 lncRNA upstream 1687479 7734097 ~ 7734384 (-) True G115577
TU144762 lncRNA upstream 1695356 7741974 ~ 7742210 (-) True G115579
TU144763 lncRNA upstream 1695923 7742541 ~ 7742747 (-) True G115580
AMCG00018263 mRNA downstream 160030 5881546 ~ 5886000 (-) True AMCG00018263
AMCG00018265 mRNA downstream 237187 5794517 ~ 5808843 (-) True AMCG00018265
AMCG00018264 mRNA downstream 261130 5783076 ~ 5784900 (-) True AMCG00018264
AMCG00018262 mRNA downstream 300326 5741029 ~ 5745704 (-) True AMCG00018262
AMCG00018258 mRNA downstream 433555 5608590 ~ 5612475 (-) True AMCG00018258
AMCG00018274 mRNA upstream 21685 6068303 ~ 6124832 (-) True AMCG00018274
AMCG00018289 mRNA upstream 82095 6128713 ~ 6155791 (-) True AMCG00018289
AMCG00018292 mRNA upstream 111662 6158280 ~ 6182812 (-) True AMCG00018292
AMCG00018286 mRNA upstream 173355 6219973 ~ 6231007 (-) True AMCG00018286
AMCG00018293 mRNA upstream 262751 6309369 ~ 6464857 (-) True AMCG00018293
TU144435 other downstream 94975 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 679276 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 741601 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 741642 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 758157 5286386 ~ 5287873 (-) True G115174
TU144568 other upstream 571857 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 591724 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 1696600 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 3193194 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 3872428 9919046 ~ 9924582 (-) True G116165

Expression Profile