RNA id: TU144532


Basic Information

Item Value
RNA id TU144532
length 1666
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G115395
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6217528 ~ 6219216 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAGatttcaaagttgttttttaatgtaaaaatacatttcattggaTCCACATACATGTCGAACCCTTGGCAGGATTCGGTGTCAAGCTCTGCTGGAAACACTGGAAAAATGCAGATCTATATCCGTTTAAGACCCAAAGCATGAAAAGCTGCCACGGTGTTTTTAAAAGCCCTTCAGTATTTaccaacacaaaacattttaatttgtatacattaaggtaaaaagaaaaatcaagcaAATTGTAATAACactttgtgaagaaaaaaaatctaaattaatgcaaaaaagcctatctataaaataaatacagcttcaGTTACTTTGGCATCTTCAATTCAAAATTGTGGTTTTTACCTTCCTAAGGACTAAAACCATTTATATAGATGGacctacacacacaaaagaaatcCAATCTGATTCCCAACTATCTACTTCAAATTACCCTTATACTAATGTataacttcatttaaaaaaaaaaaacaCAGATCTCTGGATCAAAATTCTGCACACTGAACATAaaagttcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcactgtGTAGAGTAATACATTAGGTGAAAAATATTCACATGAATGAAGCGCGTTTAACAAGAACACAGGGCTCTCCTTTTAGATGTGTTCTGGCTCCAGTAGGCTTCAGTTTGGAGCTTAATGACAATCCATCTAAGATACCTCGTTGAATTTCTTTTTGGCTTCGCATAGGTGTACAAAATAGTGTTCACGGCCGGCCTTAGTGGGTTGACTGAAAACGCCTATGTATGAAgttttccactttttaattttgcaatgaaataatttaatgttcattttcaaGTAAAACGTAGTGCCCTGCAGATGTGGCTGCATCATATTGTACTTTGATCTGGCTTCTAATAAAGCTTAGGTCAGTGAAACTCTTAAACCAAAATGCAACATTTCCCAATTGTACTAACGCTGCCCGATTCACATGTCAAAGGATAATCGTAAAATAGGGTGGTGACAGTGTAACCAAAAAGCAATTTCACAACTTGGAAATGTTAAATGGAAGGCTTCTCAACTTTATAGCTGTCTAGTGGTTAAAGCAATAAATGGATGTCTTGAGGGCAAGTCTAATACCAAAACGTTTTGTGGATGTCTTgcagttattttagttttcaagtCTGCACATCCGATCAGTACTCCAGCTATTAAGCCTTTTAATCACAGCATATATGGCTTCACCAAGAATAGGGttaaagtttatatattttaaaatggtacaaAAGGGTTAAACTTCTATATAATACAATTCCTAGTTTTATATAGGTTTCCAGTATGCTACTGTTAATATATTGTTGCAATCTTAGTAATATTTTGTCATTGTATTTtcactatacatttaaaaaagaattatatacaaaatgtattcctttgACTTGCGGGTGGCAGTTGGTTATTCTTGCGGAACAGGGGTCACCGTCCTTCATTTGCGCTTCCTCAGAACTAGATACATCAAGCCGCTGAGCAGGGTCAGGGGAAACGCAATCCAAGCTAGAACGAAGGAGGACCCAAAGTCGCCGTCTTTCAAACTCCCTGGATGAAAGCTCTTGTGCTCGGCGGTGTAAATCGAAGCTGCAATCATTACGCaaagagctggagaggagagacaagGACAGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144448 lncRNA downstream 170910 6046030 ~ 6046618 (-) True G115332
TU144388 lncRNA downstream 463506 5750285 ~ 5754022 (-) False G115279
TU144390 lncRNA downstream 463607 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA downstream 463607 5750285 ~ 5753921 (-) False G115279
TU144386 lncRNA downstream 467485 5749783 ~ 5750043 (-) True G115278
TU144711 lncRNA upstream 782586 7001802 ~ 7002005 (-) True G115534
TU144760 lncRNA upstream 1514881 7734097 ~ 7734384 (-) True G115577
TU144762 lncRNA upstream 1522758 7741974 ~ 7742210 (-) True G115579
TU144763 lncRNA upstream 1523325 7742541 ~ 7742747 (-) True G115580
TU144788 lncRNA upstream 1623121 7842337 ~ 7842708 (-) True G115596
AMCG00018292 mRNA downstream 34716 6158280 ~ 6182812 (-) True AMCG00018292
AMCG00018289 mRNA downstream 61737 6128713 ~ 6155791 (-) True AMCG00018289
AMCG00018274 mRNA downstream 92696 6068303 ~ 6124832 (-) True AMCG00018274
AMCG00018263 mRNA downstream 331528 5881546 ~ 5886000 (-) True AMCG00018263
AMCG00018265 mRNA downstream 408685 5794517 ~ 5808843 (-) True AMCG00018265
AMCG00018286 mRNA upstream 757 6219973 ~ 6231007 (-) True AMCG00018286
AMCG00018293 mRNA upstream 90153 6309369 ~ 6464857 (-) True AMCG00018293
AMCG00018283 mRNA upstream 365760 6584976 ~ 6593102 (-) True AMCG00018283
AMCG00018291 mRNA upstream 391417 6610633 ~ 6652773 (-) True AMCG00018291
AMCG00018284 mRNA upstream 434673 6653889 ~ 6675207 (-) True AMCG00018284
TU144435 other downstream 266473 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 850774 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 913099 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 913140 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 929655 5286386 ~ 5287873 (-) True G115174
TU144568 other upstream 399259 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 419126 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 1524002 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 3020596 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 3699830 9919046 ~ 9924582 (-) True G116165

Expression Profile