RNA id: TU144760


Basic Information

Item Value
RNA id TU144760
length 288
lncRNA type intronic
GC content 0.47
exon number 1
gene id G115577
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 7734097 ~ 7734384 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTAATGGTGGTAAAATGTGAAGGCGATGTCATTGTTATCATCGGGGGAGTGATGTACTTTGCCTTCACCCCCTCTTGCACTAGGTAGTCCAGGTTTGGTGTTTCAACGTCCTGGTCATAGTTCCACCTAAAGCCATCAAAGGAAACCACCAACAACTTGTTGAAAGTCTTTCTCTTGGCCTGCAACGGTCTGCCTTCACCCTCGTGTATTAGAAGAACTGCAAGCAGGAAGAACCACCTTGCAGTCATTGTTTTAGATTATCTGATTGCTCGCGTGTGGTTCCAGA

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144711 lncRNA downstream 732092 7001802 ~ 7002005 (-) True G115534
TU144532 lncRNA downstream 1514881 6217528 ~ 6219216 (-) True G115395
TU144448 lncRNA downstream 1687479 6046030 ~ 6046618 (-) True G115332
TU144388 lncRNA downstream 1980075 5750285 ~ 5754022 (-) False G115279
TU144390 lncRNA downstream 1980176 5750092 ~ 5753921 (-) True G115279
TU144762 lncRNA upstream 7590 7741974 ~ 7742210 (-) True G115579
TU144763 lncRNA upstream 8157 7742541 ~ 7742747 (-) True G115580
TU144788 lncRNA upstream 107953 7842337 ~ 7842708 (-) True G115596
TU144791 lncRNA upstream 125932 7860316 ~ 7868626 (-) True G115599
TU144949 lncRNA upstream 695742 8430126 ~ 8433570 (-) True G115732
AMCG00018303 mRNA downstream 573463 7153091 ~ 7160634 (-) True AMCG00018303
AMCG00018302 mRNA downstream 597250 7133898 ~ 7136847 (-) True AMCG00018302
AMCG00018304 mRNA downstream 857919 6866912 ~ 6876178 (-) True AMCG00018304
AMCG00018301 mRNA downstream 883303 6827619 ~ 6850794 (-) True AMCG00018301
AMCG00018299 mRNA downstream 907874 6821595 ~ 6826223 (-) True AMCG00018299
AMCG00018306 mRNA upstream 10712 7745096 ~ 7763759 (-) True AMCG00018306
AMCG00018310 mRNA upstream 148823 7883207 ~ 7894569 (-) True AMCG00018310
AMCG00018311 mRNA upstream 209733 7944117 ~ 7972869 (-) True AMCG00018311
AMCG00018314 mRNA upstream 306126 8040510 ~ 8045893 (-) True AMCG00018314
AMCG00018315 mRNA upstream 333817 8068201 ~ 8073947 (-) True AMCG00018315
TU144582 other downstream 1090825 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 1110484 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 1783042 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 2367343 5356846 ~ 5366754 (-) True AMCG00018251
TU144253 other downstream 2429709 5300107 ~ 5304388 (-) False G115183
TU144767 other upstream 8834 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 1505428 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 2184662 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 2395176 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 2573206 10307590 ~ 10309195 (-) False AMCG00018424

Expression Profile