RNA id: TU144762


Basic Information

Item Value
RNA id TU144762
length 237
lncRNA type intronic
GC content 0.48
exon number 1
gene id G115579
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 7741974 ~ 7742210 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGTTTCAGATCAGAATCGCCCACTAGCATGTGTTCTGTGACCGCCAAGGAACCATTGTGGGGCTCCGGCATCACACCCAGAAGTTTGCACATGAGTGGGTAGATGTTGATACTGTCGAAAGGGTCGGCGAGGTAATTCCTTTTAAAGTCGGGGCCAAATGCTCGGAAGATTGTTTTCATATCCATTTCCTCATTGCTGAAGCCGTGGTCTCCTTTGTTGACGTAAAATATGATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144760 lncRNA downstream 7590 7734097 ~ 7734384 (-) True G115577
TU144711 lncRNA downstream 739969 7001802 ~ 7002005 (-) True G115534
TU144532 lncRNA downstream 1522758 6217528 ~ 6219216 (-) True G115395
TU144448 lncRNA downstream 1695356 6046030 ~ 6046618 (-) True G115332
TU144388 lncRNA downstream 1987952 5750285 ~ 5754022 (-) False G115279
TU144763 lncRNA upstream 331 7742541 ~ 7742747 (-) True G115580
TU144788 lncRNA upstream 100127 7842337 ~ 7842708 (-) True G115596
TU144791 lncRNA upstream 118106 7860316 ~ 7868626 (-) True G115599
TU144949 lncRNA upstream 687916 8430126 ~ 8433570 (-) True G115732
TU145037 lncRNA upstream 775124 8517334 ~ 8519203 (-) True G115807
AMCG00018303 mRNA downstream 581340 7153091 ~ 7160634 (-) True AMCG00018303
AMCG00018302 mRNA downstream 605127 7133898 ~ 7136847 (-) True AMCG00018302
AMCG00018304 mRNA downstream 865796 6866912 ~ 6876178 (-) True AMCG00018304
AMCG00018301 mRNA downstream 891180 6827619 ~ 6850794 (-) True AMCG00018301
AMCG00018299 mRNA downstream 915751 6821595 ~ 6826223 (-) True AMCG00018299
AMCG00018306 mRNA upstream 2886 7745096 ~ 7763759 (-) True AMCG00018306
AMCG00018310 mRNA upstream 140997 7883207 ~ 7894569 (-) True AMCG00018310
AMCG00018311 mRNA upstream 201907 7944117 ~ 7972869 (-) True AMCG00018311
AMCG00018314 mRNA upstream 298300 8040510 ~ 8045893 (-) True AMCG00018314
AMCG00018315 mRNA upstream 325991 8068201 ~ 8073947 (-) True AMCG00018315
TU144582 other downstream 1098702 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 1118361 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 1790919 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 2375220 5356846 ~ 5366754 (-) True AMCG00018251
TU144253 other downstream 2437586 5300107 ~ 5304388 (-) False G115183
TU144767 other upstream 1008 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 1497602 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 2176836 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 2387350 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 2565380 10307590 ~ 10309195 (-) False AMCG00018424

Expression Profile