RNA id: TU144767


Basic Information

Item Value
RNA id TU144767
length 3901
RNA type TUCP
GC content 0.41
exon number 9
gene id G115581
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 7743218 ~ 7773892 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAGTCAGAGCTCCAGGGGTATCACGTTTAATATGGGAAACTCTCTCGGAAATATTTGTTCTCAACTTGGTAGCAATGCTGTGTCTTCTGTGGTATATGTAAACATAttACAGGATCGGGCAACTGTACACCATCAGCAAACACAGCCACGAGGAGAGCGACAAAGGAGAGGGGGTGGAGGTGGTACGAAACGAGCCGCACATTGACCCGGCGCACGGGGAAGGCCAGTTCACGGAGAAGAGAGTTCACTTGTCCAGTAAGCTTCCAAGCTGGGCTCGTGCCGTGGTACCTCGGATATTCTACATCACAGAGAAAGCCTGGAATTACTATCCATATACAATTACAGAATATACGTGCTCTTTTTTGCCCAAATTCTCCATCCATATAGAGACAAAATATGAAGACAATTGTGGGGATAATGAAAACATTTTCAATGTGGACAAAAATAACTCGGACCCAGAGGTGTGCTTTCTGGATATTGCCTATGATGACATCCCGGATAGACATTACAAAAGCTCAGAGGATCTCCGGTGCTTTGCCTCGGTAAAAACGGGAAGAGGCCCTTTAAAAGAAGGCTGGAGAGAGAACACCAAGCCAGTGATGTGCTCTTACAAGCTAGTGGGAGTCAAGTTCGAGGTGTGGGGTCTGCAGACAAGGGTGGAGCAGTTTGTACATAAGGTCATCAGAGATATCTTGTTGGTGGGGCACCGGCAGGCCTTCGCTTGGGTGGATGAGTGGTACACCATGACTTTGGAGGACGTCCGTAAATTCGAGAATCAGATGCACGTGGCCACAAATCAAAAACTGGGATACCAAGAGACATAGCTGACACCCTGCCAATGTATGtcatcttttatttcattttaaagttcaTATTCATATCATGAATACAGTGAGTTACACTTTCTAATCTAATGAAAATGATAGTGTTAAAGGgacaattcattttaatgagacTTTTATCACAATGGTTCCATACAATAAAAAGAATGTCTAATGACTGATGAGCCATCAAAGCAAGCTTACATGCTTCTCAGTAATGTAATGTGAAACTTCAACAGTACAATATACCTACTTCCCAGTTGGAATATTGTTCAGTATATAGGCAGTCCACTATGCAACTTTTTAACTATTGTTTCTTGAACTGTTGTGGAAAATGTTGATGTTGATTGCTTTTATACCTTGTCTCATGTTTCACAGTATTAGAGGTGAACACTGGGCAATACTGCCATCTAATGGGGAAATATAGCacttattttttacttcaataTGCAGTTAAAACGTCAACCGTGCATTAATCCCATAGGTATATTACAGACCGCTGATGTTGGACTTTCGTTACCACCTTGAACAACATTTTGTGCTTCcgatatttgtattactgtgaAGTGATTTGTGCACgtcttgtttttttggttttgttttcagaattttttctgtgtgttttcttgaGGTGATTTGCCATTTTTTCTTTAGTGTTCAAACTAATCTGTCTCAGACTCGTCCCAGAGAGATGTGTTCGGTAAGTGTTTTGAATTCCTCTAAAGTATACAGGGAAATCCTGCACAGCCCTGATGTAACCCCCATGGTTTATCCTTCCTGACGTTCGCTCCTAATGTGCCAAAGGAGAACATGTCTGCCTTCGTTTTTCTTGTCCTTGTGATCGATGCATAACTAAGAACAGGTAACGGAGTATAAAATGCGAATATCCCCCTTTCAAGGACCATAACTGATGTCCTTTCCCACCCTCCACCAGATATGTCCATGGAAGAGGTCCGGGAGTACGAGAGAGAGACGCAAGAAGCCACCAATGAGAAAATTGGCCTGATGGCGCCCACCATCTCCATCCACGAGGTCGCCCAGCCACCCACCACACGCAGCGCCCCGGCCAGCGCACCTTCCACCCCTGTGAACGGAGACCCCCCGGACTTCCTCAGCGTTCCCAAGGATCGGCCCCGAAAGAAATCCGCCCCAGAGACACTCACCCTCCCTCAGCTGCGAGAACGCGCCCTTCCCAAATAGCATTCCCAAGACGGGAGAAACCTGGACTGAAGCGTTCCCTTTccggttttagtttattttctaatatatttcTAATACAGTACgtatgtgtacatgtatatatgcacatgtatacatatttatggagttaacaattaataaaacaagatttAAGCGTTGATCTAAtgataattttatttgtattattgtcctTGGCAAGGTCTGGAGTTCAGAGAAGACATTGCCAAAATGGCCCagatgtttctgtatttttctgccTCAATTAAGACGGCCATAAACGTTTAGTTAGGAGGAGGTAATTGCACATTGTGCCAGTAGAGTTTTTCGAATCCTACCCTTTACATACTCTGCAATGGACGCATTACACTGAGAACGCTCTTTCAGGTTCAGTCCGATTGCAGATGTAACATGCGTATTGAAATGCAGGGGAGCTGCTTTTATTCAGGTGTTTGTCTAAGATGATTGTTACGCAATTTGTTAATCAAAAGTGCTTTTGGAGGTTGGGGTAGGGTGCTGACATTGGTCTCGTTCCTTTGTGATTAGCAGGGATATTCCTCTGAAATTATAGCTCCTTGTAACTCATTAGCATATTCTTGGATGagactgttttaaatgtttaagaaaacaaatatctcCTAGGATTGTAGTCCAAAGACAATAGGAGGAAATGCCAATGGAAAGAATTGCAATATAGTGTATTTTAAAGGCCTTAAATGCAAGCCCTAAGGCAACGTCTTTTGTTggtgtaaaaatgaaatgtaggtGATGCATGATTTCTCTGGAACTTAATTCATACATTAAGTTCTGGtttcaaactaaatattataattgtctTTTGAAAAGACTGACTTAGATGCTAAACTGAAATGCATTCTGTTCACCTATAAtgaaaattataacaataatgaaatggCAATCTCTCCACTTTTATGTGGactacaatgttttattttaaaatgcacgtctttgggatttttttttgtaatctttgtATGCTTCTTGAATTTGCTAAATTGTTACTTTATTACCGAATAATGCGATTCAAATGTCATTTGAGCTGtaattttcatgtttaatgttttattcatttctaATGCATTGGGAAATCTGCTGGTTTCATTTCAGATGTATGCTGTACAGGCATTTTGTTTCTGCACTGTGTCATATGCGTTCCTGCTGTTCAATCTCCTAAATGAGAGAAATAACTAATGCACGTTCTATCCAACTAGATATTCCACTAGCTCAGAATTGTTCTGTCCAGTACTTAAATGcccagagggacagagacagagtgatGCCAATTTTATGAATCTACTTTCTCACCCCACCCTCCTGgatcagtttaaaaatatatataaatttccCCGGTTACAATAATTCCGTATGTACTATGATTAACTCATCCTACACAGTACACATGCAGCTTGGCCACCGACCGGACCGAACACTGCGTATTCCTGGACCCCCTGGGCAGCATAAGGGGCAAGTAGAGGAGATCGTTGCCAACTCTGAGGGCAGCTAATCCTGGTGATCCACCTATACTTTGGCCCGTTAAGATACCAGCTGTCTCTAAACTGCAAGAGCCAGTCTGTACTATTTAGTTGAGGCCTTGACTAGTTCATCCACCTTATTCTTGGATTTAGTTTTAGTATAGATCCCTATCCAATACATTTGTGACCGTTTcttacagtaacagtaacagccCTGTAGTGTAGATGGTTTCTATGGCTTCCCAGTCATCTGTTCCACTTGAAATGAAAGTCAAACCTCGCAGGAGCTGTTTGCAAGGACTCACTGACTTTATGTAAATAGTTGTATATTCTCCGTCTGTGGCAGCGCAAATGGTTATTTAGCAGCAGgtagtaacaaaaacaaact

Function

GO:      GO:0008536

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144763 lncRNA downstream 471 7742541 ~ 7742747 (-) True G115580
TU144762 lncRNA downstream 1008 7741974 ~ 7742210 (-) True G115579
TU144760 lncRNA downstream 8834 7734097 ~ 7734384 (-) True G115577
TU144711 lncRNA downstream 741213 7001802 ~ 7002005 (-) True G115534
TU144532 lncRNA downstream 1524002 6217528 ~ 6219216 (-) True G115395
TU144788 lncRNA upstream 68445 7842337 ~ 7842708 (-) True G115596
TU144791 lncRNA upstream 86424 7860316 ~ 7868626 (-) True G115599
TU144949 lncRNA upstream 656234 8430126 ~ 8433570 (-) True G115732
TU145037 lncRNA upstream 743442 8517334 ~ 8519203 (-) True G115807
TU145083 lncRNA upstream 868454 8642346 ~ 8648687 (-) True AMCG00018344
AMCG00018303 mRNA downstream 582584 7153091 ~ 7160634 (-) True AMCG00018303
AMCG00018302 mRNA downstream 606371 7133898 ~ 7136847 (-) True AMCG00018302
AMCG00018304 mRNA downstream 867040 6866912 ~ 6876178 (-) True AMCG00018304
AMCG00018301 mRNA downstream 892424 6827619 ~ 6850794 (-) True AMCG00018301
AMCG00018299 mRNA downstream 916995 6821595 ~ 6826223 (-) True AMCG00018299
AMCG00018310 mRNA upstream 109315 7883207 ~ 7894569 (-) True AMCG00018310
AMCG00018311 mRNA upstream 170225 7944117 ~ 7972869 (-) True AMCG00018311
AMCG00018314 mRNA upstream 266618 8040510 ~ 8045893 (-) True AMCG00018314
AMCG00018315 mRNA upstream 294309 8068201 ~ 8073947 (-) True AMCG00018315
AMCG00018316 mRNA upstream 305343 8079235 ~ 8081255 (-) True AMCG00018316
TU144582 other downstream 1099946 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 1119605 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 1792163 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 2376464 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 2438789 5300107 ~ 5304429 (-) True G115183
TU145207 other upstream 1465920 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 2145154 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 2355668 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 2533698 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 2561309 10335201 ~ 10342089 (-) True G116306

Expression Profile