RNA id: TU144883


Basic Information

Item Value
RNA id TU144883
length 2576
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G115678
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8352077 ~ 8372827 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCcctttattaaacattaatatacatcATACAGGGAAATAttgatgtaatatttaatacCCATACAATATGCACACATATTGAAACCatgtagaatacattttgtCCATGCACTCATACGGTGTAAAAGTAAAAGTCACCTTACACCTTAATTGTACTCATTATAAAACGTGGCTTAACATTTAACATCACGACCTGTCAACACTGTAAAGGAGTCATCAGGCCGATTGGAATACACTTGAAAGACCACCGATGACTGGAAAAGGACTGGAAAGCAGATCCTGAACCTAACAAACCAGTCTGATCAACAATCCCATCCATTTATAATATAGAAATGCAcgttatagtgtgtgtgtagaataCTGAAACACAGACCATCCATTCATtccttcttttaatttattatcagtTCTTATTTCTTGAATACATAATTCAGAAAGTAACAGGTAAAATGAAGGGAGAAGTAAAAAGGCCAAACTCAAAGGATTAGCCTACCTACAACAAATATACAGACAACACCAGAGAAGCAGAAAGGACAGATGTATTTACAGGCGAGGAAAGTGTCCAGGCAGTGGCACTGGACCGGAGAACGGGCGAGGTCAGCTAGTGGAGCTGGATCGGGCAGAACGCAGATGTTCTGGTAAATACAGCAGTAAGTTTTAACACTTTGTACCCTGGATCAGTGTACCAGAGGACAGTCTTTTCTTTCGAATATTGATGTCCAGTTTCCTTCTACAAATGTCAGTGCAAcgttaaaaacaagaaaacaaaacaatagagcAGAAATCCAATTGCAAGGAAGCTTGCTTTGCAATTCCCAGccatacaaaaaaacatcaatttcaATCAAACAATCCACTTGGCAGAAGCAATATCCCTCACAAAGATCTGTACAGGAAATCATATATCCACTAGGTGTGTTAACCTATTTGTTTCCACATTAAAAGAAAGGATTACAGCACAAGTTTAGGTTATTAATGAGGACTCGTTCGttttatcattataaattaTGAACAAGCCTGGCTTTCTCCACTCCAGTCGGGTTTGCAGCCAAGAATGGATTGAGGCTGACACTCTCTCTAATGAGCTGCAGAATAATGAGGGGAGGATGTACATATGAGTGGGGGTGGGAGGATTTTTCAATACTGTGATGAATCTTGGGAACAAAGAagttggtttaaaaaaacacaacaaaaagctCATTAgtcaaatgaaaacagcagGCAAAACAAATAACTTAGCATTGCATTTGGGGGGGTTGCTTGTGTATAGATGCATCGACTTGCTGCACCCCCAGCCCAGCCCTCTCCAGAAGGAAGGCATCCGCTTGGTGATCGAGGGACGAGGAGAGTCTGTAGGCTGATTTCATTGGCCTCGTTCTGAACAGGGAAGTGGGGTGCCCTTTTCTCCTCAGTGGCTTTCATTTTACTcattcttcttctccttctgctTGAGCAGTTTGTTGATCTCTCTCTTGGCCATGGCGGCGTACTTGCTGATGAAGCCGTGCTGGTTCAGCCCggggagcagcagcaggaagcTCACAAGGTAGGTCAGGAACAGGTTGTGAACCTGCTGTCCAATCCAGGCCACCACCACCAGAGTGATGATCACAGACATGAAGTACTAAGAAGGGATGGGAAAGTCAAAGTTATCAAACGTACCAACCACACACGTTAACACAGGTGACTCATGGCAAAACTAGACTAAAGTCTAATGGTTGAAGGCCACATCAGTAAGGCCCTTTGGTCTCCGCCTCACTGAGATTAATAGCTGTTAAAATACATGTCTTTattgataaattaaatattcagtttgtGATTTAGCCTACAGAAAACCGCAAAGCTCCCTTCGATTGAACAGAGTTAAGAAGCGGCAGCCAGATAGTtatactttcaactacaaaaCGCTGAGATGCTGGGTTCTCTCGTTCTTCAGTAGCTGCTCTACTGCACCGTGTTCTGGTGTCACCCTGCCCTCTCCCCCACCACCTGTCCATTCCCCAGCCCCACGTACCATCTTCGGCTTCTCCTCTTTCAAAGCGAAGATGCGTTTCCACCAGCCCACTACACGGCGCTGGGTCTTCACCAGGTTGCCACAGATCTCATGGAAGCGCTGCTGCTGTTCAGTGGTCACTTGTTGGAACCGAAGATTCTGGGAGCGAGGGTGGGCACCAGGTAGTCCGCCAGACACAGGACCATCACCATGCAGGACACCCCGGTCAGCACAGAGGGGTCCAGGATGGTGATGGTGTTGCCCACACTCTGGATGGTGACCGCGTCGGTGGCGGAGACTTCCCCAGGCAGGGCGATCTCGGTGCTCTCCATGGCCGCCAGGCGGGGGCTGATCTCGTCTAGCCGCAGCAGGTAACTGGCGCGCTTCTGGGCCCGCTGCTGCAGACTCAGCATGATCTGAGACGTGACCGCAAGGTTAGAATGGGCACTACACGCATTCAAGTTGTTTCTCTAACCCCATTTTGTTGATCACGATTGATCAACTGAAATTGTATGTTCTCTATAAATTTAAATGCACCTCCCACTACACTAAGAGATTAATAGTATGTCCCCCCTTTCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144888 lncRNA upstream 4241 8294416 ~ 8347836 (+) False G115679
TU144889 lncRNA upstream 4241 8294416 ~ 8347836 (+) False G115679
TU144892 lncRNA upstream 4241 8343130 ~ 8347836 (+) True G115679
TU144843 lncRNA upstream 257628 8094200 ~ 8094449 (+) True G115640
TU144782 lncRNA upstream 453897 7897940 ~ 7898180 (+) True G115591
TU145024 lncRNA downstream 330330 8703157 ~ 8704903 (+) True G115796
TU145109 lncRNA downstream 489254 8862081 ~ 8862511 (+) True G115873
TU145111 lncRNA downstream 495715 8868542 ~ 8870342 (+) True G115875
TU145137 lncRNA downstream 663503 9036330 ~ 9036583 (+) True G115896
TU145180 lncRNA downstream 826050 9198877 ~ 9199440 (+) True G115931
AMCG00018324 mRNA upstream 706 8350111 ~ 8351371 (+) True AMCG00018324
AMCG00018325 mRNA upstream 36536 8290001 ~ 8315541 (+) True AMCG00018325
AMCG00018320 mRNA upstream 184327 8154810 ~ 8167750 (+) True AMCG00018320
AMCG00018321 mRNA upstream 201527 8140007 ~ 8150550 (+) True AMCG00018321
AMCG00018318 mRNA upstream 233645 8116069 ~ 8118432 (+) True AMCG00018318
AMCG00018327 mRNA downstream 27006 8399833 ~ 8404453 (+) True AMCG00018327
AMCG00018332 mRNA downstream 113739 8486566 ~ 8514892 (+) True AMCG00018332
AMCG00018333 mRNA downstream 169164 8541991 ~ 8543115 (+) True AMCG00018333
AMCG00018336 mRNA downstream 180761 8553588 ~ 8592721 (+) True AMCG00018336
AMCG00018335 mRNA downstream 231894 8604721 ~ 8623654 (+) True AMCG00018335
TU144853 other upstream 229906 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 457628 7893627 ~ 7894449 (+) True G115590
TU144414 other upstream 2401060 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 3588172 4761518 ~ 4763905 (+) True G115049
TU144009 other upstream 3748088 4601490 ~ 4603989 (+) False AMCG00018216
TU145016 other downstream 320537 8693364 ~ 8694719 (+) True G115789
TU145182 other downstream 826830 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 866984 9239811 ~ 9241815 (+) True AMCG00018360
TU145295 other downstream 1189334 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 1236250 9609077 ~ 9612918 (+) False AMCG00018380

Expression Profile