RNA id: TU144892


Basic Information

Item Value
RNA id TU144892
length 3847
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G115679
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8294416 ~ 8347836 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGATTTACCATTGGTTGGTTTCTTTAATGGAAAGTCTAAAAAACTGTTTGAGGTTTTGTACATGTGCAAGACACAGCGTGCATTAATGGGATATTGATAGAAACTCTTAACATGTACAAGACACCATGCAGCGTCGTCTTATAGCAGacagaacatgaaaacaaatgtacaggcATTTGCAAACAAGATACCATTCATACCGTTAGGAGCGTGCAGTGCGATCACCGATAACATTACTGTGACCACAACAGATCTCTCTCCATTCCAATGGATATCCATCTCTTGACCCCACCAACCCTAATTACATCAATGGCTCTCAGAAACAAAGGTGCCACGAGAGAATAGTAGCAGATGAAAAACTAGGATTATAGAAGTGGATATATGTGCCTATAAAGGGAGCATTGATGATGCAAAACACAACTAAGAAGAAACTTGAGTAAAAGGGATAAAGACAAGAAACTTTGTGGAAGGGGGATTGGAAAACCATGGTTGTAAGATTAATCACAAATCTTTTCACTTCTGAACAATGACCTTTTTGTGAACCAGTTAactggggaagaaaaacaaatctttacatGATACATTTAGAACTTGCATATGGCGAGAGATCCAGACAGCGCCGTCTGTCCGCTCATCCTgccaggaaacaggaagactaGTGAAAGGACAAGACTTGAAAGCCAAGCCAGGAAGAGACTGGGAGTCTCTCGTCACAACGATGATGACAGGTGAGCATCTTCAGAAGACTGCGGTGTTACTCACCCTGAACTGGGAGGAAATTATCTGAATTACATCGCACGACTTGGCCCTTCTACCCCTCACCgctcatttcaaatataaaaccgACATCAGAGCAACATTGGCGGCTGTGCCAAGATGTAATTCAGTGAGTCGGGAAGATTGCAAGATATGGGCGACTGTGGGATAGGATAATGAAGGATAATGGGATACAGAAATTACAGTTGGAATTCACATGTAGGAATAATTTGAAAGGCTGTTTTTCATCATTATGTTTAAATGAAGCAAgggaggaaataaatacaatctccCAAAAAGTATATGTTGAGAAGGGGATGGGGAAATACtgcagaacaaatacaaaagcataAACCTCCTACCCTCAGAAGCGTGTTAAATGCAAAGAAAAGCCCAAAGACTGAGGTGCTCACAGCATCTCACCTCAAACACTTTCCATGGAGCTCCAAGGTAACTCCACTCAGCAGCTGTTGCCTTACAGCTCCACCACAGCGCACTCTCTCAGCATGCACTTCGTTAAAGGTACAACTTTTCAAATACCGGAGTACCGAAAAGCAACTCCCCCCCAGTTTCTGCGTTGCCATCCCAAGAACGACCCTAATTACAGAGCAGTGTTTTGTCATCTTTTTTGATTGAATGCGTACATTTTCCAGCGCCtctaattttaattacagaacagCTCCACAACACAAGACATTCCCTGCCAGTTCCCAGCACTCAATTATTACAGCGCTCTGGGCGAACGCAGACGCTTTTAGAaccagatttcttttttattcattaattttaaatgctttgatatttatattttaacagcctaaattaaaattaaattattcattacaAAAGATGCTTCAATCTAAAATTTGCCAGCTGGCCACTCAACCCTCAGCTCTAAAAAGTCAACCAGGAAACCAGCTCTAACTGCCTGTGGAAAACACTAACCAAGGCTACCTTTCTCTGAGCTGGTGCTTGAGAACAACTGAATTACTATACAATAGAGACGACTGCTGGATGGGGAGTGACATGTCACTAGACCCCTACTCTAAAAAATTTGATATGAATCCATGTCCCAATAAGGGGTCACAATGAAGCTCACAGAATTAACCCCAAATAAAGGGTTACAGGACAACCACTGAAATTCAAGGGTTTGCCACAACAGTAAAAATTCAAGAACTACCTTCAGAATACTAAAACCTAGAAAATGAATTTCATAAATAGTCTCCCCAACTGGaatgttcatattttatgaataaagcTTTTTATGGAACCTGGCAAAACCAGGAtgactgaaatgtttaaatggaaGACTTCTGCCCACACGTGGACAAGGAGAAAAGTGCTTCTACAAAATTATTCTGTGAGCAAATGTAGTCtattaagaatataaaatataaaaatgtacattaaatcacattacAGAGTGCTGGAAAAGGCTTCTGGGGAACTAGGCATGTTCAGCAACTAGAACCAAGGAGACAAAGGAAGGTTTCAAACCGACTGGGAATTTGCCTGTCAAGCATCAGTTCAGGAAATTGACCAACACAAACAAAGCAGGAATCGCAACAAAGATACAAGCTGTAACCCCACACACAGCCAGGAAGCTGCAAAACTCAAATTTACACTGAACAAGAAAATGGAACCAGCTGCTCAATTCATAGCCAAATAACAAATTAGCACACGACTCATCCAAGTCCAGTGGaaactgttttatttgcagGTGCCTTTACATGTTTTAGAAAAAGAATCCCAGGATTTTGCCTCCTGTGTGTTTTCGTCTGGCTTCTTCATGGTCCATGATGCCAGCCGAGGTGGTCAAGACGATGTACCTGCAAACAGAGAGGGGCTATACGTCAGCACGACAGACCTGCATCACAGTATTCTGCTGATCATTTTAATCTCTGGTAGGATCTGACCAGAAGGCTCAAAAGCaggaaagcaattttaaatgCTCATGGCGCTCAGGTGACTCGATTGtaaacagcagcacaaacattAAGTTCCTCATGCTGAGATGGGTATAAGTACatgtgacaaaacaaaagtacattaCTTCATAATCACTGCTTAAATTCCACAATTACCAACACCTTACAGACTAATAATGTATGTACTGCAgtatagaataaaaaaaaacttaaacttGAAGCACTCATGAAACATTAAGAGTACAAGGACAAGCaagaattatataaataaaattaaagtagGCTATAGCAAGAGCATTTTCATCTCAtcacttaatgtttacaaatgacaaaagCTCAACATTGCGGTTTCTTTCATATTACTGtagatataattttaaaagatttataACCATTTAAATGGTTGTATGGAGTTCTGCAGAGTTTAGCGGCTGTACATTGCTCTACCCTTGTGAGCTGTGCATGATCCTGCAGAAAGCAACCCTGCTGTACATGTTTGCTTGCCTTATATAAAACTTAAACTATTTCTTGCATACAGTGCACTGCATTGCAAGATACATGTATTTTAGCATTCACATTCAAGTGGATGGAAAAATGCAGCATTGAACATTAAGCACATGATAAAGATGCTCATTTTCATCATGTTAAATGGCCATGTTTTTTAATAGTGAACTCTGCTAGAAAGCAGCACAATTCTTATGAAATAATTCTAaccatgtacaatgaaaaatgtgaacTAATGGGGTTCACTAGAGCTCCCACACAATGCATTCTGGCATCAAAACTGATGTGACCTGTCACCAGTGGACACTAAAGCAGAGAGACTTACCCAAACTGTCGAGAGGGCAGCAGGTTGTTCTGCCACTTCTCCAAATCCTTAAGCTGCACATCAAATCGGGGGCTGATGATTGTTCAGCCTGCCTGTGAGATTAACAACTATTTTCCCAGCTCTGTGATCGTCGATAATCTCGAACTCGCCAATGTAGCGTGCTTCATCATGACGGTGAGGAAGCGCACGATGACCTTGGAGCAGGGCCGGATCAGAACCTGGCGTTTCCCACGTTTCTCTGCATTGTTGATGCTTTTGAGCGCATCGGCGAGAACATTCATGCGCACCATGATGCCTGTGGAGATTCAACACATCCAGGTTAGCAAAAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144843 lncRNA upstream 248681 8094200 ~ 8094449 (+) True G115640
TU144782 lncRNA upstream 444950 7897940 ~ 7898180 (+) True G115591
TU144776 lncRNA upstream 452229 7883205 ~ 7890901 (+) True G115585
TU144737 lncRNA upstream 622166 7720607 ~ 7720964 (+) True G115560
TU144712 lncRNA upstream 1256164 7085574 ~ 7086966 (+) True G115535
TU144883 lncRNA downstream 4241 8352077 ~ 8372827 (+) True G115678
TU145024 lncRNA downstream 355321 8703157 ~ 8704903 (+) True G115796
TU145109 lncRNA downstream 514245 8862081 ~ 8862511 (+) True G115873
TU145111 lncRNA downstream 520706 8868542 ~ 8870342 (+) True G115875
TU145137 lncRNA downstream 688494 9036330 ~ 9036583 (+) True G115896
AMCG00018325 mRNA upstream 27589 8290001 ~ 8315541 (+) True AMCG00018325
AMCG00018320 mRNA upstream 175380 8154810 ~ 8167750 (+) True AMCG00018320
AMCG00018321 mRNA upstream 192580 8140007 ~ 8150550 (+) True AMCG00018321
AMCG00018318 mRNA upstream 224698 8116069 ~ 8118432 (+) True AMCG00018318
AMCG00018317 mRNA upstream 228940 8097388 ~ 8114190 (+) True AMCG00018317
AMCG00018324 mRNA downstream 2275 8350111 ~ 8351371 (+) True AMCG00018324
AMCG00018327 mRNA downstream 51997 8399833 ~ 8404453 (+) True AMCG00018327
AMCG00018332 mRNA downstream 138730 8486566 ~ 8514892 (+) True AMCG00018332
AMCG00018333 mRNA downstream 194155 8541991 ~ 8543115 (+) True AMCG00018333
AMCG00018336 mRNA downstream 205752 8553588 ~ 8592721 (+) True AMCG00018336
TU144853 other upstream 220959 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 448681 7893627 ~ 7894449 (+) True G115590
TU144414 other upstream 2392113 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 3579225 4761518 ~ 4763905 (+) True G115049
TU144009 other upstream 3739141 4601490 ~ 4603989 (+) False AMCG00018216
TU145016 other downstream 345528 8693364 ~ 8694719 (+) True G115789
TU145182 other downstream 851821 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 891975 9239811 ~ 9241815 (+) True AMCG00018360
TU145295 other downstream 1214325 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 1261241 9609077 ~ 9612918 (+) False AMCG00018380

Expression Profile