RNA id: TU145288


Basic Information

Item Value
RNA id TU145288
length 276
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G116011
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9527482 ~ 9527757 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttgatgtggtcgatgcctttcatgattttgaagacttgaatcaagtccccacgtagtctcctctgttccagggtgaacaggttcagttcctcagtctctcagtaggacgttcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtccacagtatccagatgagctctaactagcgcattgtacagtctgaacatcactgcccttgttctcaattctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145282 lncRNA upstream 14728 9512314 ~ 9512754 (+) False AMCG00018374
TU145270 lncRNA upstream 41336 9483366 ~ 9486146 (+) False AMCG00018369
TU145266 lncRNA upstream 50374 9472497 ~ 9477108 (+) True G116002
TU145267 lncRNA upstream 50374 9472497 ~ 9477108 (+) False G116002
TU145252 lncRNA upstream 80462 9445610 ~ 9447020 (+) False AMCG00018368
TU145296 lncRNA downstream 36969 9564726 ~ 9566691 (+) True G116019
TU145297 lncRNA downstream 40707 9568464 ~ 9569497 (+) True G116020
TU145298 lncRNA downstream 42470 9570227 ~ 9570461 (+) True G116021
TU145299 lncRNA downstream 43493 9571250 ~ 9571501 (+) True G116022
TU145301 lncRNA downstream 46225 9573982 ~ 9575102 (+) True G116024
AMCG00018373 mRNA upstream 6495 9519667 ~ 9520987 (+) True AMCG00018373
AMCG00018374 mRNA upstream 14246 9512380 ~ 9513236 (+) True AMCG00018374
AMCG00018369 mRNA upstream 42648 9480952 ~ 9484834 (+) True AMCG00018369
AMCG00018368 mRNA upstream 80338 9439657 ~ 9447144 (+) True AMCG00018368
AMCG00018365 mRNA upstream 167796 9354703 ~ 9359686 (+) True AMCG00018365
AMCG00018371 mRNA downstream 17784 9545541 ~ 9561135 (+) True AMCG00018371
AMCG00018372 mRNA downstream 34304 9562061 ~ 9564564 (+) True AMCG00018372
AMCG00018380 mRNA downstream 78904 9606661 ~ 9612918 (+) True AMCG00018380
AMCG00018383 mRNA downstream 147931 9675688 ~ 9685520 (+) True AMCG00018383
AMCG00018395 mRNA downstream 163069 9690826 ~ 9691578 (+) True AMCG00018395
TU145192 other upstream 285667 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 325896 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 832763 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 1405311 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 1633033 7893627 ~ 7894449 (+) True G115590
TU145295 other downstream 34404 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 81320 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2438490 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2988046 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3725586 13253343 ~ 13255794 (+) True G116832

Expression Profile