RNA id: TU145296


Basic Information

Item Value
RNA id TU145296
length 1966
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G116019
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9564726 ~ 9566691 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGTTTGctacatgtttttattcataaaagtcaaactacattaaatataaatgtctttagaagtgattaaaaaaaagtttgtatatatatatatttttttttacacagaatGTACAGTTtatgcaacaaaaacaacacatatatacaaCCACTGTGAAGCATGAAACAAGTGCGGTGTCGGATCTCTCCAAATGCACCTCACGTAAAAGATTATGCAAAACGAAAGTAAGGGCCTGCATAATATATTCCACTGCTAGGATACTTTTCAGATATTGGTGATGGGCTTTACAGTGTTCCACGTAGTAGCTCACAAAAACAGTTATCTTTCAGCAAACAGCAGCCTTGCAAAGTGCTTCCATATGTTACCACGTTACCACAGACACTGCACGCTGACTTTTCATCAAAAGGTTTTATagtgaagaaatacatttaaaggttAGGGATTGTAGATGGTTTTGTGTCtgattaatgcatttctttcaaaagtcATTTCAATCCTGATGAAATCCCAACTTCGATCTATCCCACAATCACAAATTCCACACCTAAAAAGTTACTGGTTCTTGGTTTGTTCGGGCCTTCTTGTGTCTGGCTGGTGGGAATGTGGGGAATGGGTTCAAATTTTCATTCTGCAGTTCACCTCACAAAACTGCCACCAGAGGGGGACCAAACAGTGATTTATGTTCATTCGCTTTAGATGAGTGAGCTGGCTTCTCTTGGTGTCTGGATATCTAATAGTACTAGTGCACTGCCCGTTTAAGAGCCACAAGAACAGACCAAACCTAGTAGGTGCGAATTATGTGTGGCATTACAGGAATGTGCagcgttttttattttctagttgGCGCCACATAATAAAGGTCACACTGAACTCTTACACGGAGAACATTGTTAACTCAATTAACTATTTGTTCAGTGcgtctatatattattttttgaagtATAGTTGATGGTGGTGTAGTTACAGGAATTACATGTATGATACAGATAACAGTATTTCAATGACTGTTTAAAGAAGTGTAGAATTGTTGATCTCATTCAGTATTTAGGGATCCTTGACTTTTGTCCTCCTTAGTGGTAGATATTAAGGTCACTTATTTGCATGAGGAAAGGATCCTACACCTGCTGTTAAATATGACATTGATAAAGCTTGCATGTGCTCACAGAGCCAATACACACAACCCCACTCGAATACTATGATGGCATAGACACATGGTTCTATCCCAGGGGAAGTTCACAGGAAGGTTATGCAGGATGAAACCTTTGGAGTCTCTGAACTACTGAAGTCCTGCCTGAAGGTAGCCATGAGAATTTGAATAGACTGCTTATCTGACCTGCTTAGACTGCTTATCTGTCGCATTGCTATATCACTGGCTCCAGGGCTGTTGACTGAACTCCTCTAGTATATAGTAACACGAAAGGGTacagaaaatatacacatatgcaTTTGTAACACACCAGACGATTACACGAGTCTGATTGGCTCTGGGTAACTGAACTAGTTCCTGAATCGTACATTAATTTCTATACCTGACGCCATTACTCAACATGGGGAAGATGGCAAGTAAGCAAGTGACAGTATATAAAGTTGGACTGCATATGGAGTGTAACTGACAGCAGTGTCTTCTGCAAGGGGACTCTAGGGATTATCCTTACGTCAGCAGCAGTTTGAAATCGAGTCCGTGCCACACCCAGCCCGCTCCCAGGCCGCCCCCCTGCCGTCTCCATCTCACAACAACACTGCGACAGGAGGCCGTGCTGCCCTCTCCCTCCCACATCTCCAGAGCAACAGTTCCAGCCAAGCGTGTGGCCAGACTGCTATGGGCAGCAGGATGCGACAAAGAGCACGGCCTCCTGTCCTAGACACACAGAGCCTGACCAGCCTGTCCCTCCACAGGGCCTCCCGTCTCAGTAGCGCCTCTTTCCCAGCTGCCCTCTGTCCGTCATGCAGGTCTTTGGCCGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145288 lncRNA upstream 36969 9527482 ~ 9527757 (+) True G116011
TU145282 lncRNA upstream 51972 9512314 ~ 9512754 (+) False AMCG00018374
TU145270 lncRNA upstream 78580 9483366 ~ 9486146 (+) False AMCG00018369
TU145266 lncRNA upstream 87618 9472497 ~ 9477108 (+) True G116002
TU145267 lncRNA upstream 87618 9472497 ~ 9477108 (+) False G116002
TU145297 lncRNA downstream 1773 9568464 ~ 9569497 (+) True G116020
TU145298 lncRNA downstream 3536 9570227 ~ 9570461 (+) True G116021
TU145299 lncRNA downstream 4559 9571250 ~ 9571501 (+) True G116022
TU145301 lncRNA downstream 7291 9573982 ~ 9575102 (+) True G116024
TU145303 lncRNA downstream 10299 9576990 ~ 9577191 (+) True G116026
AMCG00018372 mRNA upstream 162 9562061 ~ 9564564 (+) True AMCG00018372
AMCG00018371 mRNA upstream 3591 9545541 ~ 9561135 (+) True AMCG00018371
AMCG00018373 mRNA upstream 43739 9519667 ~ 9520987 (+) True AMCG00018373
AMCG00018374 mRNA upstream 51490 9512380 ~ 9513236 (+) True AMCG00018374
AMCG00018369 mRNA upstream 79892 9480952 ~ 9484834 (+) True AMCG00018369
AMCG00018380 mRNA downstream 39970 9606661 ~ 9612918 (+) True AMCG00018380
AMCG00018383 mRNA downstream 108997 9675688 ~ 9685520 (+) True AMCG00018383
AMCG00018395 mRNA downstream 124135 9690826 ~ 9691578 (+) True AMCG00018395
AMCG00018385 mRNA downstream 142288 9708979 ~ 9711300 (+) True AMCG00018385
AMCG00018384 mRNA downstream 159091 9725782 ~ 9729487 (+) True AMCG00018384
TU145295 other upstream 322 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 322911 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 363140 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 870007 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 1442555 8119778 ~ 8122171 (+) True G115648
TU145312 other downstream 42386 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2399556 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2949112 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3686652 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3741207 13307898 ~ 13328272 (+) False AMCG00018520

Expression Profile