RNA id: TU145299


Basic Information

Item Value
RNA id TU145299
length 252
lncRNA type inter_gene
GC content 0.62
exon number 1
gene id G116022
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9571250 ~ 9571501 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tccTCTCCAGTGGAGCCAGTGTGAACAGCCCGGCCGTCCGCTGACCTGCTGGTCGTCCTCTCTGAAGCCAGCCTGTGTGAAGGGCCTCTCTTCCCCCTCGCCGTCCGCAGTGCGGGGCCGCTGGAGCTCCTCCTCGTAAACCAGGGCTTCTGAACCGTCCGATTCGCCGTCGAACGTCTCGTCAAAGCGAGACATGGCCTCCAGGATCTCATCGTCAGTGGTAAACAGGATTGTGTCCCCAAACTGCTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145298 lncRNA upstream 789 9570227 ~ 9570461 (+) True G116021
TU145297 lncRNA upstream 1753 9568464 ~ 9569497 (+) True G116020
TU145296 lncRNA upstream 4559 9564726 ~ 9566691 (+) True G116019
TU145288 lncRNA upstream 43493 9527482 ~ 9527757 (+) True G116011
TU145282 lncRNA upstream 58496 9512314 ~ 9512754 (+) False AMCG00018374
TU145301 lncRNA downstream 2481 9573982 ~ 9575102 (+) True G116024
TU145303 lncRNA downstream 5489 9576990 ~ 9577191 (+) True G116026
TU145304 lncRNA downstream 5895 9577396 ~ 9577600 (+) True G116027
TU145305 lncRNA downstream 7336 9578837 ~ 9579097 (+) True G116028
TU145316 lncRNA downstream 41481 9612982 ~ 9613781 (+) True G116034
AMCG00018372 mRNA upstream 6686 9562061 ~ 9564564 (+) True AMCG00018372
AMCG00018371 mRNA upstream 10115 9545541 ~ 9561135 (+) True AMCG00018371
AMCG00018373 mRNA upstream 50263 9519667 ~ 9520987 (+) True AMCG00018373
AMCG00018374 mRNA upstream 58014 9512380 ~ 9513236 (+) True AMCG00018374
AMCG00018369 mRNA upstream 86416 9480952 ~ 9484834 (+) True AMCG00018369
AMCG00018380 mRNA downstream 35160 9606661 ~ 9612918 (+) True AMCG00018380
AMCG00018383 mRNA downstream 104187 9675688 ~ 9685520 (+) True AMCG00018383
AMCG00018395 mRNA downstream 119325 9690826 ~ 9691578 (+) True AMCG00018395
AMCG00018385 mRNA downstream 137478 9708979 ~ 9711300 (+) True AMCG00018385
AMCG00018384 mRNA downstream 154281 9725782 ~ 9729487 (+) True AMCG00018384
TU145295 other upstream 6846 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 329435 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 369664 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 876531 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 1449079 8119778 ~ 8122171 (+) True G115648
TU145312 other downstream 37576 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2394746 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2944302 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3681842 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3736397 13307898 ~ 13328272 (+) False AMCG00018520

Expression Profile