RNA id: TU145305


Basic Information

Item Value
RNA id TU145305
length 261
lncRNA type inter_gene
GC content 0.64
exon number 1
gene id G116028
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9578837 ~ 9579097 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACTCATGGGAGATGGTCCAAAGTCCAGGACGATGAGGTCTCCAGCCTCCAGAGAGCACTGGCCTTTTTTATTGCCACGCGACTCCTCTGGAGGTGGGGCCTGCTTGGAGTGCAGCTGGAGCTCCTGCAGGCTGTCAGCGCTCTCCTCCCGCTCGATTTGCTCCTCCACCCAGTCCTCCTCGCCCCCGTCCGACTCCTCCCCCGCAGAGTCTCGGCTGCCCCTGCTGCTCCTgcgcacactcacactgacCTCCAGGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145304 lncRNA upstream 1237 9577396 ~ 9577600 (+) True G116027
TU145303 lncRNA upstream 1646 9576990 ~ 9577191 (+) True G116026
TU145301 lncRNA upstream 3735 9573982 ~ 9575102 (+) True G116024
TU145299 lncRNA upstream 7336 9571250 ~ 9571501 (+) True G116022
TU145298 lncRNA upstream 8376 9570227 ~ 9570461 (+) True G116021
TU145316 lncRNA downstream 33885 9612982 ~ 9613781 (+) True G116034
TU145317 lncRNA downstream 39573 9618670 ~ 9618905 (+) True G116035
TU145390 lncRNA downstream 110668 9689765 ~ 9747387 (+) True G116088
TU145520 lncRNA downstream 425176 10004273 ~ 10012673 (+) False AMCG00018405
TU145529 lncRNA downstream 453456 10032553 ~ 10041833 (+) True G116199
AMCG00018372 mRNA upstream 14273 9562061 ~ 9564564 (+) True AMCG00018372
AMCG00018371 mRNA upstream 17702 9545541 ~ 9561135 (+) True AMCG00018371
AMCG00018373 mRNA upstream 57850 9519667 ~ 9520987 (+) True AMCG00018373
AMCG00018374 mRNA upstream 65601 9512380 ~ 9513236 (+) True AMCG00018374
AMCG00018369 mRNA upstream 94003 9480952 ~ 9484834 (+) True AMCG00018369
AMCG00018380 mRNA downstream 27564 9606661 ~ 9612918 (+) True AMCG00018380
AMCG00018383 mRNA downstream 96591 9675688 ~ 9685520 (+) True AMCG00018383
AMCG00018395 mRNA downstream 111729 9690826 ~ 9691578 (+) True AMCG00018395
AMCG00018385 mRNA downstream 129882 9708979 ~ 9711300 (+) True AMCG00018385
AMCG00018384 mRNA downstream 146685 9725782 ~ 9729487 (+) True AMCG00018384
TU145295 other upstream 14433 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 337022 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 377251 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 884118 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 1456666 8119778 ~ 8122171 (+) True G115648
TU145312 other downstream 29980 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2387150 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2936706 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3674246 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3728801 13307898 ~ 13328272 (+) False AMCG00018520