RNA id: TU145529



Basic Information


Item Value
RNA id TU145529
length 569
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G116199
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10032553 ~ 10041833 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GACAATAAGATAATTCAGACAATTAGCATTATTAAATctataatatttaaacatcaaaTCTAGGCTGTTCATATTGAAATGTGTGGTACACTTAGTTATGACACTGATGCAGTGAGTTAAGGGGATGGGACTTACACGGTGGGGATGTACTCCCCAGGGAATGCATTGGTGGTATAGCTGATCAGGAGGCATGTTTTACCCACAGCTCTAGaagaagCCGTCACCGACAACCACACACTTTATGGCCTGCATTGGTCCGCACGAAGTCTTGCGTCCTCGTCGCCGGTTCGGATAGACCACTCTTTGTTAGGcgaacttgttttttttttttttcaacaaccaaaacaaggaaaaataaaacgcaAGAGGAGAAAGAAGGAAACGCAGCTATATCAGCGACAAACACGTTTCTCTATAGATCTGTATGTATAGAAAAATCAAATCACCTACAGGTCACCACACGCTGCCTCTGTCGTGTCTGATTAGAACTTGTGTAGCAAACAGCCaccaccccaaaaaaaaaaaaaagcactcgGAGCTCAagcttcaaaaaaaaaaaaatccctccc

Function


GO: NA

KEGG:

id description
ko00603 Glycosphingolipid biosynthesis - globo and isoglobo series

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU145520 lncRNA upstream 19880 10004273 ~ 10012673 (+) False AMCG00018405
TU145390 lncRNA upstream 285166 9689765 ~ 9747387 (+) True G116088
TU145317 lncRNA upstream 413648 9618670 ~ 9618905 (+) True G116035
TU145316 lncRNA upstream 418772 9612982 ~ 9613781 (+) True G116034
TU145305 lncRNA upstream 453456 9578837 ~ 9579097 (+) True G116028
TU145543 lncRNA downstream 2619 10044452 ~ 10046143 (+) False AMCG00018406
TU145548 lncRNA downstream 78344 10120177 ~ 10121558 (+) True G116214
TU145613 lncRNA downstream 173554 10215387 ~ 10216789 (+) True G116264
TU145625 lncRNA downstream 247161 10288994 ~ 10292221 (+) False AMCG00018422
TU145661 lncRNA downstream 302902 10344735 ~ 10345082 (+) True G116300
AMCG00018407 mRNA upstream 7063 10015946 ~ 10025490 (+) True AMCG00018407
AMCG00018405 mRNA upstream 19958 10006099 ~ 10012595 (+) True AMCG00018405
AMCG00018396 mRNA upstream 64148 9960221 ~ 9968405 (+) True AMCG00018396
AMCG00018397 mRNA upstream 89252 9926956 ~ 9943301 (+) True AMCG00018397
AMCG00018401 mRNA upstream 106607 9899962 ~ 9925946 (+) True AMCG00018401
AMCG00018406 mRNA downstream 2634 10044467 ~ 10046523 (+) True AMCG00018406
AMCG00018415 mRNA downstream 47589 10089422 ~ 10094644 (+) True AMCG00018415
AMCG00018412 mRNA downstream 59091 10100924 ~ 10120054 (+) True AMCG00018412
AMCG00018413 mRNA downstream 96147 10137980 ~ 10150773 (+) True AMCG00018413
AMCG00018414 mRNA downstream 109132 10150965 ~ 10159643 (+) True AMCG00018414
TU145312 other upstream 419635 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 468149 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 790738 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 830967 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 1337834 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 1924414 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2473970 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3211510 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3266065 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 3978095 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile


TU145529 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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TU145529 Expression in each Bioproject

Bar chart with 7 bars.
TU145529 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.