RNA id: TU145548


Basic Information

Item Value
RNA id TU145548
length 1382
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G116214
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10120177 ~ 10121558 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TgcccattcatattttttttcccccaacactGAAAAAGCCACTCTGAGATTTCtgggtttttgtttaaaaaaaaaaaaaaaggctgctATGTATACAGTAAGGAAAACCATATGCACAGCAAACCACagtcaaagcaaagcaaaactgcaCCCGGCGATCTTTAACCAAGACATTCCCTCCTGCTCACAGAAATGGTTCAGTCCTTAAGGCTTTTCAGATTAGCTCCACAGGAAGGAAGCAGCGATTGTAAACAAGGACAACTGTAGATTTTTAAAGTcctttgctttatatttttttgtacattgtatAAATTTTACatgctacagtacagtaaggGTAGAATgttatttaccattttaaattccttatacatgtataaaataagCAAACTATACCCATTTAAATTTCATAGTGCAGTTCTGAACTATGAtgtggaagttttttttttttttaattttattattttttaaatcacttttctaTTGGTTTTCCTGATACAGGACCttttttatagaaaacaaaacaacaactgatagtacagttcaaaataaattcacagTATCATTTTCTTCTGAAGCTAGAAACTtaactggattaaaaaaaaaaagcaatacatctaTTTCCATAAAATACATGAGAAAAACATGATGCAAGATTTAATGTTGATATTAATTTGCTGTCATTGAGACATAACTGACAATCTATTTCTTCATTTGTCAGTGAGGTTGATGGAATATTAGtctgcagagaaaaaaacaaaaacattctcaAGTCCTCTTAGCTTAAAAATAACGGTGCAGCAGACACAGTGACCCGTGTGGCGTCCATCAGTGGATGTGGTGACATCTGGATTGATGCATGACCGCTTACATTTTGATTCTTAATATGAGACATACCGAAAATGTTGATACTTCAGCACAAAAGACTAGTCTTCccaatcattcattcattaattcattcattcagtctttgttttgtttcagttgttggTTTTTCTGGGGGTCCCCCCCTCCAGGGATTTGCACtcgaagaagaaaaaaaaagtcacatttatacacaagtaAGAAACAAGTCCTGAGTCTTTAGTTGAGCAGCAGCTGAGATGTTAAGATACAGGGCttcttctttatttcattaaatatatttaaattctacatttttttagATTCCCAAGTGTTTTAGTTTCCACCACtgaagagtaaaataaaataaaacaaatccacagataaaaagttaaaaaacaagaagttaaaaaagaaaagaaaacaaaatctgtggtaaaaatacagtattccCAATGATTAAAGCACCACTTCCAGTATCCAGTATGATCTTCTCTTGTACATGGAAATATTATTTTGGGATGGCTTCTGCAATATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145543 lncRNA upstream 74034 10044452 ~ 10046143 (+) False AMCG00018406
TU145529 lncRNA upstream 78344 10032553 ~ 10041833 (+) True G116199
TU145520 lncRNA upstream 107504 10004273 ~ 10012673 (+) False AMCG00018405
TU145390 lncRNA upstream 372790 9689765 ~ 9747387 (+) True G116088
TU145317 lncRNA upstream 501272 9618670 ~ 9618905 (+) True G116035
TU145613 lncRNA downstream 93829 10215387 ~ 10216789 (+) True G116264
TU145625 lncRNA downstream 167436 10288994 ~ 10292221 (+) False AMCG00018422
TU145661 lncRNA downstream 223177 10344735 ~ 10345082 (+) True G116300
TU145662 lncRNA downstream 229406 10350964 ~ 10351562 (+) True G116301
TU145663 lncRNA downstream 234414 10355972 ~ 10357357 (+) True G116302
AMCG00018412 mRNA upstream 123 10100924 ~ 10120054 (+) True AMCG00018412
AMCG00018415 mRNA upstream 25533 10089422 ~ 10094644 (+) True AMCG00018415
AMCG00018406 mRNA upstream 73654 10044467 ~ 10046523 (+) True AMCG00018406
AMCG00018407 mRNA upstream 94687 10015946 ~ 10025490 (+) True AMCG00018407
AMCG00018405 mRNA upstream 107582 10006099 ~ 10012595 (+) True AMCG00018405
AMCG00018413 mRNA downstream 16422 10137980 ~ 10150773 (+) True AMCG00018413
AMCG00018414 mRNA downstream 29407 10150965 ~ 10159643 (+) True AMCG00018414
AMCG00018411 mRNA downstream 38906 10160464 ~ 10174296 (+) True AMCG00018411
AMCG00018422 mRNA downstream 136247 10257805 ~ 10292261 (+) True AMCG00018422
AMCG00018425 mRNA downstream 177445 10299003 ~ 10299554 (+) True AMCG00018425
TU145312 other upstream 507259 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 555773 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 878362 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 918591 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 1425458 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 1844689 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2394245 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3131785 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3186340 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 3898370 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile