RNA id: TU145599


Basic Information

Item Value
RNA id TU145599
length 375
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G116256
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10169248 ~ 10169622 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTAACTAACAATTGCAGAAGCTGTTACCTGAGCCAGGACTGACACACGCGGGGGCCAGGGCTGGCATTGAGTGCAGCATCCTCACACTGAGGTCTGAGACACTGTGCACACCTTCCACAGACTGCGAGCGTGCCGACTGGAGAGCCGAGCCACTGCGCgcacctgtacacacacacaggacacatcactgacacactgctaCACTCTCATTCACATGCAGAAACAACATTACATTACTGACACACCACCGCATTTACCCACACAAGACGCACAGCAATCACTCACACGCCAATGCGGTTACCAtcacacaaaagacacacatCGATCGACCACTGCCAGGTTCACAAACGCACTGGTCTGAAACATAGagccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145598 lncRNA downstream 5726 10163278 ~ 10163522 (-) True G116255
TU145572 lncRNA downstream 24649 10143425 ~ 10144599 (-) True G116236
TU145444 lncRNA downstream 380669 9784430 ~ 9788579 (-) True G116136
TU145440 lncRNA downstream 391899 9774306 ~ 9777349 (-) True AMCG00018390
TU145352 lncRNA downstream 641512 9527492 ~ 9527736 (-) True G116065
TU145719 lncRNA upstream 439396 10609018 ~ 10671019 (-) True G116352
TU145723 lncRNA upstream 568929 10738551 ~ 10739008 (-) True G116355
TU145734 lncRNA upstream 801258 10970880 ~ 10971087 (-) True G116365
TU145736 lncRNA upstream 803473 10973095 ~ 10973307 (-) True G116367
TU145737 lncRNA upstream 807600 10977222 ~ 10979678 (-) True G116368
AMCG00018417 mRNA downstream 18739 10147532 ~ 10150509 (-) True AMCG00018417
AMCG00018416 mRNA downstream 34629 10120599 ~ 10134619 (-) True AMCG00018416
AMCG00018410 mRNA downstream 127732 10029502 ~ 10041516 (-) True AMCG00018410
AMCG00018408 mRNA downstream 154355 10004233 ~ 10014893 (-) True AMCG00018408
AMCG00018409 mRNA downstream 167098 9986174 ~ 10002150 (-) True AMCG00018409
AMCG00018418 mRNA upstream 4798 10174420 ~ 10189358 (-) True AMCG00018418
AMCG00018421 mRNA upstream 26587 10196209 ~ 10198405 (-) True AMCG00018421
AMCG00018419 mRNA upstream 33157 10202779 ~ 10218488 (-) True AMCG00018419
AMCG00018420 mRNA upstream 54050 10223672 ~ 10231201 (-) True AMCG00018420
AMCG00018424 mRNA upstream 133432 10303054 ~ 10332982 (-) True AMCG00018424
TU145571 other downstream 32479 10129560 ~ 10136769 (-) False AMCG00018416
TU145480 other downstream 244666 9919046 ~ 9924582 (-) True G116165
TU145207 other downstream 911046 9239812 ~ 9258202 (-) True AMCG00018364
TU144767 other downstream 2395356 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 3525976 6638342 ~ 6643272 (-) False AMCG00018291
TU145658 other upstream 137968 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 165579 10335201 ~ 10342089 (-) True G116306
TU145668 other upstream 190507 10360129 ~ 10385216 (-) True G116307
TU145708 other upstream 396173 10565795 ~ 10572002 (-) False AMCG00018431
TU145777 other upstream 892033 11061655 ~ 11068318 (-) False AMCG00018437

Expression Profile