RNA id: TU145663


Basic Information

Item Value
RNA id TU145663
length 1386
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G116302
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10355972 ~ 10357357 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tccCTTCAATAGAATTATTCATTTGAGAAGATAAAAGGTAAATCAAGACTCTGGGGAGAGGACATCAGCCCTTTTGTCCTGACGCTTGCAATCACAGAAGAACAATCCACTTTGCTGTCACTCCTTACAGGTTCTTACACAAGGCACTGCTCAGTAATCACAGTCATCCAAGTGATGAGATGAGGTATGTAGTCCAATGGGGGTAATAAAGACATTCGAGTGCAAGTTCGACGTCACACAGCGGAGCACCAAAAGGTCATACAATTTACTAATCTGGAGTCAAGACTCATTACTTATAGGTTCAGTTATCGACAACAATAGCACACCCGCAAAggcaaaatttaaatataaaatatattctgaaagcCAACAAGCCAGTGAATGTGGGTAATTATGAAGCTGGTGACGTTGCTATCTGAGGTTTAAGGGTGTGAGTGAAACGATGCGAGTGACTTGTCACTGACTGGAGAGCTCTATCGGCCGTGAAGTGGCACTAAAACTTACTGCCTGGACTTCTCCAGCTCCCCGTACAGCCAGCCATCTTTCTCTTCAGGGATCAGGAGAGTGATGATGTCTCCCTCGTCAAAGCTGAGCAGCGTCTCATTGCTGCCGGCTGTGTGGGGGAAAATGGTCCTGACCTTTGGCCTCTTAATCATGTTCAGCCCAGTGGACACGGAGATCGACCTGGGCAGGCTGATATCTTCGTTGTTGTTATCTGCCATTAAAAGACATCAAGGTAATTTGGTTTCAAATTCTTCAAATCTTcttcttcaaaaataaatcttcttcattaaaaataatactgctGGGGAGAACAAGTGcaaacaaccccccccaaccATAATGCAAAGCTTGTTACCCATGTGTCATGAAAAAGATTCCCTTATTCTCCCTGGGGGTAACTGTTTATGTTAAATCACATTAGGGGCTTTTGAGAGATTTGAAATACACCAACTTTGTGGAAGGAAATACAGCTACGGACGAAGAAGCTTTTAGAGAGCCTCTGTTTATCTGagtttatatattgatttattttttgaataaaCAGAGCTTTCTTCAGCCCAGTCAGAATGCCTGGATACTCTCAACCTTGGCAGGGAAAGAGCCAGAGTAACTGGGAGTTGCACATAGAGAAATGTGTCGCCTCCAAGGCTGAACTTGCCTGAGATCCTATTTGCTGTCACAGGGACCTTGGCTGATGGGGTGAACATGTCTGCCAGGGGGCTGGGATGTGCTTTcagtgggggggcagggggcgtCTTCGGCGTGTCTGTGTTCTGTCAGACACAAAGATGAACAGAGGTCATTGCAGAGTTGTGAATACTACTGCTGCTCTGCAAGACAATAGGCTGGAAAGAAAGCAAACCTGgcttaaaaagaacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145662 lncRNA upstream 4410 10350964 ~ 10351562 (+) True G116301
TU145661 lncRNA upstream 10890 10344735 ~ 10345082 (+) True G116300
TU145625 lncRNA upstream 63751 10288994 ~ 10292221 (+) False AMCG00018422
TU145613 lncRNA upstream 139183 10215387 ~ 10216789 (+) True G116264
TU145548 lncRNA upstream 234414 10120177 ~ 10121558 (+) True G116214
TU145664 lncRNA downstream 2325 10359682 ~ 10359903 (+) True G116303
TU145722 lncRNA downstream 380929 10738286 ~ 10739175 (+) True G116354
TU145726 lncRNA downstream 619665 10977022 ~ 10979685 (+) True G116358
TU145745 lncRNA downstream 704212 11061569 ~ 11083789 (+) True G116374
TU145839 lncRNA downstream 895062 11252419 ~ 11256165 (+) False AMCG00018449
AMCG00018423 mRNA upstream 13548 10333521 ~ 10342424 (+) True AMCG00018423
AMCG00018425 mRNA upstream 56418 10299003 ~ 10299554 (+) True AMCG00018425
AMCG00018422 mRNA upstream 63711 10257805 ~ 10292261 (+) True AMCG00018422
AMCG00018411 mRNA upstream 181676 10160464 ~ 10174296 (+) True AMCG00018411
AMCG00018414 mRNA upstream 196329 10150965 ~ 10159643 (+) True AMCG00018414
AMCG00018426 mRNA downstream 74833 10432190 ~ 10440657 (+) True AMCG00018426
AMCG00018429 mRNA downstream 139516 10496873 ~ 10562962 (+) True AMCG00018429
AMCG00018432 mRNA downstream 217539 10574896 ~ 10609128 (+) True AMCG00018432
AMCG00018434 mRNA downstream 567679 10925036 ~ 10934367 (+) True AMCG00018434
AMCG00018435 mRNA downstream 601208 10958565 ~ 10975479 (+) True AMCG00018435
TU145312 other upstream 743054 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 791568 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 1114157 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 1154386 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 1661253 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 1608890 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2158446 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 2895986 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 2950541 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 3662571 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile