RNA id: TU145722



Basic Information


Item Value
RNA id TU145722
length 890
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G116354
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10738286 ~ 10739175 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atttatatttaagaaaactaaatgatattacacattctagagttatgaatcattaattgatttctcaaatgtcataaATGatgaactccaaactgttaaacttatctgaacttcgtcgcagagaggcctcgggcttcgggctcagataacagcacacggcacgaggtccgtgtggttgggaacaaaggcagtccggttcggctttgtccaagaacttccactcagtcgatgcacctggaactTGGGGTTTGGCGaatgtagagtcttttccaaacagattttccactggtttgaaggctccaaggttgtgcacaaaatcttcttggcaagcagggtCTCTCACCGTACttatttgaagacaaagtctttgaggaaagcagggccctgttcgttccaagggtcaagtttcttaagactcaaatagctatgTAAATGATTGACACTTTCGCATTCaatcgacttagtcaattgtccagctgtaaaactccactgatcaggtgggcacaggcgggcagcgcagtctgtaaagttctttatttaataaagtcctttaaaagaattcttcgtacggctcaatctccttctcccagtttaactcttctgttgtcggcaaagacttggttgttttctggttccggttcgggcaacagagctacaggttgagctgtggcagcgagtttctggttcaggtgagagagagagaaagagagactgtgcgctgttctttatagtctgtcagatcaataggtgattggttcttgagtttgtgagattggatttcggtttcagcccccagtgtcctattggaggggggatTGATTTATGACtaatgtcaatccatgccatcttttggaaatgccggttggcccgggttcgtagctctgtgtctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145664 lncRNA upstream 378383 10359682 ~ 10359903 (+) True G116303
TU145663 lncRNA upstream 380929 10355972 ~ 10357357 (+) True G116302
TU145662 lncRNA upstream 386724 10350964 ~ 10351562 (+) True G116301
TU145661 lncRNA upstream 393204 10344735 ~ 10345082 (+) True G116300
TU145625 lncRNA upstream 446065 10288994 ~ 10292221 (+) False AMCG00018422
TU145726 lncRNA downstream 237847 10977022 ~ 10979685 (+) True G116358
TU145745 lncRNA downstream 322394 11061569 ~ 11083789 (+) True G116374
TU145839 lncRNA downstream 513244 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA downstream 513244 11252419 ~ 11256165 (+) True AMCG00018449
TU145882 lncRNA downstream 671630 11410805 ~ 11412070 (+) True G116477
AMCG00018432 mRNA upstream 129158 10574896 ~ 10609128 (+) True AMCG00018432
AMCG00018429 mRNA upstream 175324 10496873 ~ 10562962 (+) True AMCG00018429
AMCG00018426 mRNA upstream 297629 10432190 ~ 10440657 (+) True AMCG00018426
AMCG00018423 mRNA upstream 395862 10333521 ~ 10342424 (+) True AMCG00018423
AMCG00018425 mRNA upstream 438732 10299003 ~ 10299554 (+) True AMCG00018425
AMCG00018434 mRNA downstream 185861 10925036 ~ 10934367 (+) True AMCG00018434
AMCG00018435 mRNA downstream 219390 10958565 ~ 10975479 (+) True AMCG00018435
AMCG00018436 mRNA downstream 252982 10992157 ~ 10996021 (+) True AMCG00018436
AMCG00018433 mRNA downstream 308807 11047982 ~ 11053345 (+) True AMCG00018433
AMCG00018445 mRNA downstream 392370 11131545 ~ 11139307 (+) True AMCG00018445
TU145312 other upstream 1125368 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 1173882 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 1496471 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 1536700 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 2043567 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 1227072 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 1776628 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 2514168 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 2568723 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 3280753 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile