RNA id: TU145726


Basic Information

Item Value
RNA id TU145726
length 2664
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G116358
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10977022 ~ 10979685 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAAAGCCTTAGAAAATCAGCCTTTCAGAAGTGCAGGTTTTTAACCAGCAGAGAAAAACGTTTGCCTTTCAAAGCAGAGAACAAACAGTGGGTTCCTCCTATTAATTGGAACAGATTTGCAGTTGTTCACTAAAGGGCCCTCGCTCAATCACACAGCCTACCTAAGTGATGTTCAAAACTAGCTTACCCGTGATGCCTCTTCAGGAATTCACACCCTGAGGACTCAATTACATGTTGCCCAGAGCTCATCGGAGAACATTATTTCCAAAAGAATTTGACCctccatttttaaatcatatcttCCCATGCAGGACAGTCCATCGAATGGTCACCCGCTTCCCTCTGCCATGCTCTGAGGAGCGAGATCTGACCATTACTGCTTCCACACATATGGCAGATTTCCTCTAGGCAAATATGCACACAATGTCAGGTTGGTTATTGTTTtgcctgtctgtgtttcagCCCCTGCAATCGTTAGTGGCATTCTCAGGAAGTTATACCAAATGTCAGTCGTGTTTTGAACAGATTccatttttctctctgtgtgaaggcAAACGTTTGTCAGCCCAGTGGGATGAGGAAAGGGGCTCACTGCTAGCACCTTTTGTGTAGAGAATGCTGGGAACAACTGGGCTGCTGTGACATAATCTGGCACAATACTACCCATACAGAAAAGACTTATGAAATATACCAGTCAGTGTATTTTGTAagtatatacaataataaataaaggtcaggaaaaaatacattggactacattttgaaatagattgtgtgtgtatgtgtatataaatatatttcagcaaatactgacatacattttgtatatatgaatacatgtcAACTTGTGcctgaaatacatttagattttaaaatatacttcattatattctcaaaatgtatttcagtatatattcCCGGCcttacaaaactttttttttattttaatggtgtgAGATTGGTTTTCTTCAGTGAAGAAGACAAATTCCTGGAATGATCCATTACCCCCTAACTTCACTGTTCTCTCTCTCGTGCGTGCTCTCTCCCTCTTAACCATACGGTACACATTGTAACTTTGGGGCTGACAAGTTCAGTTTACATGACTCCAAAACAGTTGAAGTGCCCCACTCTGTTATAAGTATATTTGAGCTGAAGGAtatgtttatttgattatttggaTGTTTAATGCAGGGGGGGGCAGAACAACACTGTCTGGCACTAAGTCTTAAAATGGGATAACAGTACTGAATAGCATTGTCTCATGCAGAAGTGCTTTTAATGAAGACGTTACTTTTAACTTCTAATAACCCAACTACTAAAATACGGAGTCAAAGTGTACACTCACAGTCAGTCCTTTCTTGAAAGCTACATCCAAAATAATAGGATACTTATTTCATTCAGCTTCGAAAAATATGGAGACATCTATCAATACCCCCCTTCTATGTttacatctgtttttgtttgtttgtttgtaaactttaatcTTACAtgaccaaaaatatatataattcagttgttttttttttagcatcaGTTCTGTTCTAAAAGCTGGTAGCTTTAGATAGGTGAAATCCTACCCAACTACACTATTGACAAGGCTCTCTAAAGGCTTAAGGACTACctatttcacaaacaaaaaccctGATGCATGTTGATTTCATGGACAAGTCAAGCTGAGTAGTGGGGCATTGTTCTGCAGTAAAGGTAAAATGGGTGGGGAAACAACGGTTTTACAATTTCTGCAAAAATCAGAATATAGTATTAAAAATGTCGCTATATAAGTTTTTTGTACTAGAATACAACTGACTGCAAATATAGGACAGTGTTAGAAACTAGTTGGTGCTATATGACTGATGGATTCAAACTCACTATATGGAGAAGGTGTGATTAAAGAGGCATCTTATCCCACTGCATCAAATACTGTTGTGGGCCATCTTTTCACAAGTTACTTCTACATATACCATGTATTACGTATTACAAGGTAACAATTGGAAGATCCATGTCTTGTTCAGAcctttatgttgtgtttttatttgatttgatttttgatttattttattgaaaacaatgtgatgttatttattcaagtctaaatgagaaatgaaaataaaaagggggatttcttgatttttctctctagttctgcttttttcttcttccagatTTCAATCTTATTGATCGGAGATTTTCTATATTTGTCAGATGGTAGAGTGCAATgctaaaagtaaatatttaaataaaattgaaatacatgcatactgaaaagaaaagaagaagaaaaaaaacatgaaatatgaaagTTAACCCAGTGCCTGTGTAATGACAGAAATACTTGAATGTTTGGGTTcactacaaaattaaacaattaaaaaaaaaaaaaagctgaaaaaaagtCTTTATACCTGGATTTAAAGGAGGTTGAATGGGGGCAGATTATTTGAAACTTGTCTCCCCCAGACTGTGGTAGCAGAAAACTGCTACTggatatttccttttttcttttcctcgtCGTATTTTCATAGttcagtgtaaataaatataaatactttgacGACATAAAGAACCAATTTCTGCAGCAGTAGGCCTTTTGATTCttttttgcattgtttctgTGGAAATTTGTTTGCAACATggttaaagtgcaataaaaaaatatatggcaaA

Function

GO:

id name namespace
GO:0071310 cellular response to organic substance biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:0010033 response to organic substance biological_process
GO:0071774 response to fibroblast growth factor biological_process
GO:0007166 cell surface receptor signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145722 lncRNA upstream 237847 10738286 ~ 10739175 (+) True G116354
TU145664 lncRNA upstream 617119 10359682 ~ 10359903 (+) True G116303
TU145663 lncRNA upstream 619665 10355972 ~ 10357357 (+) True G116302
TU145662 lncRNA upstream 625460 10350964 ~ 10351562 (+) True G116301
TU145661 lncRNA upstream 631940 10344735 ~ 10345082 (+) True G116300
TU145745 lncRNA downstream 81884 11061569 ~ 11083789 (+) True G116374
TU145839 lncRNA downstream 272734 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA downstream 272734 11252419 ~ 11256165 (+) True AMCG00018449
TU145882 lncRNA downstream 431120 11410805 ~ 11412070 (+) True G116477
TU145884 lncRNA downstream 435796 11415481 ~ 11415738 (+) True G116479
AMCG00018435 mRNA upstream 1543 10958565 ~ 10975479 (+) True AMCG00018435
AMCG00018434 mRNA upstream 42655 10925036 ~ 10934367 (+) True AMCG00018434
AMCG00018432 mRNA upstream 367894 10574896 ~ 10609128 (+) True AMCG00018432
AMCG00018429 mRNA upstream 414060 10496873 ~ 10562962 (+) True AMCG00018429
AMCG00018426 mRNA upstream 536365 10432190 ~ 10440657 (+) True AMCG00018426
AMCG00018436 mRNA downstream 12472 10992157 ~ 10996021 (+) True AMCG00018436
AMCG00018433 mRNA downstream 68297 11047982 ~ 11053345 (+) True AMCG00018433
AMCG00018445 mRNA downstream 151860 11131545 ~ 11139307 (+) True AMCG00018445
AMCG00018444 mRNA downstream 163578 11143263 ~ 11151189 (+) True AMCG00018444
AMCG00018443 mRNA downstream 186258 11165943 ~ 11170854 (+) True AMCG00018443
TU145312 other upstream 1364104 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 1412618 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 1735207 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 1775436 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 2282303 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 986562 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 1536118 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 2273658 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 2328213 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 3040243 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile