RNA id: TU145745


Basic Information

Item Value
RNA id TU145745
length 3121
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G116374
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11061569 ~ 11083789 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cattctgTTCAGGTCCAGGGCATGGCTGCATTCTCTGAAGAAAAAGGGCAAGGAGGCAGTCTCTTTAATAAACACCTTTTAATACTATCGGCTTGTTATaaaatttggttttatttacaatCTCCAGATACATCAACAAGCGAGTCAGAAGAAGGAAGAAGAAGGGGTCAGTTCAAGAGCGatccaaaacaatgaaaaataaaattacaaaagattttcaaacagaaaatatacGTCTCCACTacagatttattattaaacCTTTCAGAGGTAAAGTGCTTTTGTTACTCCGTCGTGGTCTTAAAAACCTGGTGCTGAAATACTCCCCCCCACAGCAAAAGACACCCAAGAATGAGGAATAGGTCACCCAATGCATTTTCTAGCCACTTTATTTGATTAATACAGGTACAAAATGCAAGCATTAGAGATCCGAAATATGAAGACTAACACTTACAGTGAATTACCTGGATCTGTTTTCCATGGGCTGAAACCTGGAGGGTCTTTCAGCAAAGCGATCTTTACAAGAGGAGACATTATTGATGAACCAGTTATTGGAAATATTGCTTCTAAGAGACTGCAAAGGTGTTCATCATTTAAGGTTTTGAAAGGCcagaaaagcaaatataaataaataaataaatagataaatacaaaatgaactgtattgattgttttttaaattatatattgtataaagaTCTCAAAATCTGTCAGCCTCGCCAATGCCCATCACATAACGCACCTAAACGATTACTTTCTTTGTGGATCACCTGCTGGCATTGAATAACCGGCCAAGTGTTGATTTGAATACGGAGCATCAGCCTTGCAGTAGCAAGTGACGAATAACAGACACGTCTGCGGATCCCTGCATGCTACAGCAGATTCTGTTGTGAAGGGAAGaggcgaggggagggagggggctgCTTTGAGTTTCCCCTGACTGGACACTGAGCTGTCAGACAGCATCGTGCTCAGGCCACAGTCACCGCCCAGGGGCAGGCAGCGGGCTGGGGAGGAACAGCCTGACACACCCCGCTCCATGCCCTTGTCCTGTCACCGCactgccccccccgcccccacccctctcctctAGTACAGATTACAGTAAGATCTACAGCTGGTCTCTGCAAAAGATCTGGAACATTTCTTCAGGGAAATGGGAGACTAACGTGGCAGCCCTGGTTGTTGCCAGTTTCCAAGTCTTTTCTTTATAACAAAAGGATGAATCAATTTACTCAGGGTGTTTCAGCTAATTTTCACATCATCTCTGTGTTTatagtctttaaaaaataataattgagcaTGCAGAAACCCCTTAAGAAACACAGGACACACAAACAGCCACAtattagatttatatatatatatattttcagattaatttcttGTTATATTCAAACTCTGTGCTTCACCAGGATTGCACTGTGCTTTCTACTATGATACACCTCTAGTAAAGCTCTTGCTTTGAAAGAGACCTCCAGGTAGCCAGCCAGGATCTGTGGCATTCACTGAAATACTGCATGGTGACAGGGTGTCCCTCTCACATTCCCAGGCCTGCTCAGAAACCACTAGACTTGCTCAGCGCCAATAAAGCACAAAACCGCTCTATGTATTAGAAGAACATTGGGTTTAAATAGCGCAGGAGAAAAAAGGATGAgtctaaataaagaaaaaaaaaaaaaaaaaagactgccaCATCCAAACATTCttagaaaattataaatatttctttCGTTTtgctttcatatatatatatacacaaagaaAACGTATCAAACTATATGAAAATAACATCATAAAGGATTACTTATCTATTACAAAAtccttctatttatttttttatctttttttttttttgttaaatttaaagAGCCCAGAGTGGGTAGTGCAGATGGAGGCGAtatctgtacagtgtgtgtataaaagGAAAAGTGCCAGCCATTTTTCTCCTGAGCAGTATGTCCCTCGCAGGCACCTGTACTGCCAGAGCCACAGCCGCCTAGGGGGGGCAGCTCGGCATTGCTCAGTAGTGACAAGGGGCTCAAATGTGCTTTTTAGTTTATCTTCAAATCCAATTGAACACTGACCTTGCGACAGGCTGATTAACAGTCTCAGGACCCATCTACATTGACAATGGCGTCCGTCTGAATTAAAACGGGACAGAAATCTGATATTGTATTCTAATTCTGTCCATCCCCCTGCATCAAGCCAACTCAAACCTCAAAACTCAGAAGGGGGCTGCCCTGCTTTCAAACTGGCCAGGAGAGGTACAATAAAACTCATCCTTGCAGAACACTGGATGGACAAACAATGGGTTGTGGGAATCAAAAAACTGTTATTACAAATGCACACGAAGCCACTCTCTAGATCACAAACCTCAGTGATCTTCAAATCCACTCCTCAGCGGCCAAAGCGcgtctggttttcattccacctgagatcttaattaattcattaaattaatcattcaCTTAACTGAACAAATCGAAGCCCTTTCTTAGATCTAGGAATGATTTAAACCTCTAAAAGCCGCCAGATCACGGTCCCTGAGCAGTGGATTAGGAGAACATTGGCTGAACTACAGACCTGAAGTCGTTCAATAGAGGCTTGTTGTTTTGGTGAATATGAAGGGGAGTGAAAACAGACTTGACAGGAATACATCCCTGTACCTTTGTAAGCATTACATTCCTgacctcctcctcgtcctcctttTAAAAGGGGAGaggtgtggtgggggggcattCATGTGCCACACGGTGGCCAGACACTGTCACTGCAGCGGATATCTGacaaaagggaaagaaaaatcgGCTCGGGcctggaataaaatgaaatcgttataataataacaattaaacttGAAGCCAGAAAGCAGTCACTGTCTGAATGAGTGAAGGTAAGCAGTCTCCTTAAAGGacaggtgtttttgtttgtttgtttgtgggaaAACAAAGTATCTGATTTTGCCGGGATGCTGAGtaacagtgtgtctgtgtacatgtgtgtgatTCCATTAGCCTGTCTTGCTGGCTAGAATCGACAGAAAGGGTTTTGGCAAGACAGTGGGTTGGGGAAAGGTGCccgtcagtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145726 lncRNA upstream 81884 10977022 ~ 10979685 (+) True G116358
TU145722 lncRNA upstream 322394 10738286 ~ 10739175 (+) True G116354
TU145664 lncRNA upstream 701666 10359682 ~ 10359903 (+) True G116303
TU145663 lncRNA upstream 704212 10355972 ~ 10357357 (+) True G116302
TU145662 lncRNA upstream 710007 10350964 ~ 10351562 (+) True G116301
TU145839 lncRNA downstream 168630 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA downstream 168630 11252419 ~ 11256165 (+) True AMCG00018449
TU145882 lncRNA downstream 327016 11410805 ~ 11412070 (+) True G116477
TU145884 lncRNA downstream 331692 11415481 ~ 11415738 (+) True G116479
TU145974 lncRNA downstream 645020 11728809 ~ 11818089 (+) True G116546
AMCG00018433 mRNA upstream 8224 11047982 ~ 11053345 (+) True AMCG00018433
AMCG00018436 mRNA upstream 65548 10992157 ~ 10996021 (+) True AMCG00018436
AMCG00018435 mRNA upstream 86090 10958565 ~ 10975479 (+) True AMCG00018435
AMCG00018434 mRNA upstream 127202 10925036 ~ 10934367 (+) True AMCG00018434
AMCG00018432 mRNA upstream 452441 10574896 ~ 10609128 (+) True AMCG00018432
AMCG00018445 mRNA downstream 47756 11131545 ~ 11139307 (+) True AMCG00018445
AMCG00018444 mRNA downstream 59474 11143263 ~ 11151189 (+) True AMCG00018444
AMCG00018443 mRNA downstream 82154 11165943 ~ 11170854 (+) True AMCG00018443
AMCG00018441 mRNA downstream 113327 11197116 ~ 11199442 (+) True AMCG00018441
AMCG00018442 mRNA downstream 119399 11203188 ~ 11209510 (+) True AMCG00018442
TU145312 other upstream 1448651 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 1497165 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 1819754 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 1859983 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 2366850 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 882458 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 1432014 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 2169554 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 2224109 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2936139 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile