RNA id: TU145811


Basic Information

Item Value
RNA id TU145811
length 1586
RNA type TUCP
GC content 0.40
exon number 2
gene id G116428
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11199578 ~ 11202888 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGGCATGCGCTATTCATGGTCGGGGTGGCTCTTATATAAAGCAGTGTGCCTTTGTCCTTCCTCAGTGTGGCTGGTGTATCAGTCGCGGAGATGTGCCGGACGTGAATCTTGGAGGcacGAAGATGTTGACAACCTGTGAGAATGAACTGACGCCGATGGAGGTTGTGTGCGTGAGCTGTCCAGTTTTCATCTCCCGATTTCTCTTTACAATATAGAGAGGGGTGACAAATTGAAAGAGAAACTGCATAAATTAGTgaaggaacataacgaatgcagatgcctacAAACAGGcctactgcatgatacaattaagcaagtGGCATTGTATCCAGCTCTGGTATGTATacaaaatgctgagcaggcccagttgacctcgattttggatcaagatggcaagaggaaaggatctgagtgactttgaaagaggggtcattattggggcacgaatggcaggagctacAGTCACAAAggctgctcaactggctagtgtttcaataggaacagtgactaaagttacatctgcatttagagcTATGGGAAAGACCACCgcaaatagggttggaaattgtggtagAAAGCGCATATTTGATGACCATGATGCTCGttcattactgcgatatgtaaagaaaaacagaagcgcaactctttcccaggtgactgagaatgtcaatgcaggacgtgatcagactgtgtcggcaagaacagtccgtcgaGAACTACGCAGAGAGGGATATAGTAGGGTTGTGAAGAAGCaagtgtaattttaatattaactgAAGTTATTTGTTAACATTTGCTTAAAAAATACTGACATGATTAAAGTTGGCAAATTTTAAACTGGGTCAGCAAGATAGTTTTGTTGACTTATTAGtgatttgtttgtggtttttctGTTTCTAACTTAAGACCTGGACATGGACCGAAGATGACGAATACGGGAATTGCCCACCAGTCAGGTTGCCCAACCCATGAAAAGTGTATAAAACCTGTGACAAACTTGTAAGCTTTTGAGACTGACAATTGGACTGCTCCTATGTCGCTCTCCTGCGCTCataataaagattatatttgcTTGACTTCACTTCATTAAATAAAGGTTCTTcagttgcagtgcataaacccctcatcaCAAAGACAAATTGGTGCAGAACTGCAGACATTGTTCTGCAGGTGTGAAGGTGATgcttaatgtgtaataaaatgcaGTGTTGTAGGAAAAAATGTGCACAGAGtggaacatgtttaaaaatagtttatttttgtatttcattttgttacacTAAAACTATAGAAAAAGTGTTAAAAGGCCACTGCATAGAACTGTAACTTATTAAATTACCTATACTTCAGTATATGACTTGGAAATGTAAGTTTTCAAACCTTAATAATCTATCTCCAGCCTTATAAGTTGTTGCAGAGCTGATCTGAGTAGATGATACTTCCCTCTTTAATTCATATTGTTGTAGTGTGGTTGTCCATTTCTAGAAACACTGCATGAAAACTTATTTGTAGGCACTCCATCTGCTGTAAatggtaaatgtatatattgtaaaaatacagatcaataaatattaattcataCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145779 lncRNA downstream 52638 11088174 ~ 11146940 (-) True AMCG00018440
TU145737 lncRNA downstream 219900 10977222 ~ 10979678 (-) True G116368
TU145736 lncRNA downstream 226271 10973095 ~ 10973307 (-) True G116367
TU145734 lncRNA downstream 228491 10970880 ~ 10971087 (-) True G116365
TU145723 lncRNA downstream 460570 10738551 ~ 10739008 (-) True G116355
TU145841 lncRNA upstream 49471 11252359 ~ 11253565 (-) True G116446
TU145849 lncRNA upstream 77478 11280366 ~ 11353097 (-) True G116454
TU145912 lncRNA upstream 308575 11511463 ~ 11514493 (-) True G116501
TU145923 lncRNA upstream 328910 11531798 ~ 11532070 (-) True G116511
TU145951 lncRNA upstream 405249 11608137 ~ 11609570 (-) True G116529
AMCG00018447 mRNA downstream 3410 11173855 ~ 11196168 (-) True AMCG00018447
AMCG00018438 mRNA downstream 56724 11140089 ~ 11142854 (-) True AMCG00018438
AMCG00018439 mRNA downstream 80755 11091296 ~ 11118823 (-) True AMCG00018439
AMCG00018440 mRNA downstream 109008 11088441 ~ 11090570 (-) False AMCG00018440
AMCG00018437 mRNA downstream 115798 11061628 ~ 11083780 (-) True AMCG00018437
AMCG00018448 mRNA upstream 3854 11206742 ~ 11209424 (-) True AMCG00018448
AMCG00018446 mRNA upstream 18941 11221829 ~ 11236984 (-) True AMCG00018446
AMCG00018455 mRNA upstream 167645 11370533 ~ 11371192 (-) True AMCG00018455
AMCG00018460 mRNA upstream 184100 11386988 ~ 11393467 (-) True AMCG00018460
AMCG00018461 mRNA upstream 192216 11395104 ~ 11400567 (-) True AMCG00018461
TU145777 other downstream 131260 11061655 ~ 11068318 (-) False AMCG00018437
TU145708 other downstream 627576 10565795 ~ 10572002 (-) False AMCG00018431
TU145668 other downstream 814362 10360129 ~ 10385216 (-) True G116307
TU145667 other downstream 857489 10335201 ~ 10342089 (-) True G116306
TU145658 other downstream 890383 10307590 ~ 10309195 (-) False AMCG00018424
TU146006 other upstream 708126 11911014 ~ 11911336 (-) True G116577
TU146385 other upstream 2050197 13253085 ~ 13255769 (-) False AMCG00018522
TU146918 other upstream 3300515 14503403 ~ 14520875 (-) True G117267
TU147067 other upstream 3533250 14736138 ~ 14738312 (-) True G117377
TU147284 other upstream 4295774 15498662 ~ 15518181 (-) False AMCG00018617

Expression Profile