RNA id: TU146006


Basic Information

Item Value
RNA id TU146006
length 290
RNA type TUCP
GC content 0.48
exon number 2
gene id G116577
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11911014 ~ 11911336 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagatctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattagtctccctcggtctggggctccatgcaagatctcacttCGTGGAATTTCAATGATCATGAAAAcagtgaggaatcagcccagaactacacggaaggatcttgttaatgatctcaaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145951 lncRNA downstream 301444 11608137 ~ 11609570 (-) True G116529
TU145923 lncRNA downstream 378944 11531798 ~ 11532070 (-) True G116511
TU145912 lncRNA downstream 396521 11511463 ~ 11514493 (-) True G116501
TU145849 lncRNA downstream 557917 11280366 ~ 11353097 (-) True G116454
TU145841 lncRNA downstream 657449 11252359 ~ 11253565 (-) True G116446
TU146062 lncRNA upstream 182133 12093469 ~ 12118810 (-) True G116610
TU146071 lncRNA upstream 208472 12119808 ~ 12120607 (-) True G116619
TU146137 lncRNA upstream 376232 12287568 ~ 12289928 (-) False AMCG00018490
TU146138 lncRNA upstream 376232 12287568 ~ 12289928 (-) False AMCG00018490
TU146140 lncRNA upstream 376232 12287568 ~ 12289928 (-) False AMCG00018490
AMCG00018466 mRNA downstream 349191 11542796 ~ 11561823 (-) True AMCG00018466
AMCG00018458 mRNA downstream 468936 11437510 ~ 11442078 (-) True AMCG00018458
AMCG00018457 mRNA downstream 485526 11417434 ~ 11425488 (-) True AMCG00018457
AMCG00018459 mRNA downstream 493917 11411990 ~ 11417097 (-) True AMCG00018459
AMCG00018461 mRNA downstream 510447 11395104 ~ 11400567 (-) True AMCG00018461
AMCG00018473 mRNA upstream 15601 11926937 ~ 11944889 (-) True AMCG00018473
AMCG00018472 mRNA upstream 33963 11945299 ~ 11958566 (-) True AMCG00018472
AMCG00018474 mRNA upstream 49248 11960584 ~ 11967995 (-) True AMCG00018474
AMCG00018480 mRNA upstream 211537 12122873 ~ 12135103 (-) True AMCG00018480
AMCG00018479 mRNA upstream 227437 12138773 ~ 12147324 (-) True AMCG00018479
TU145811 other downstream 708126 11199578 ~ 11202888 (-) True G116428
TU145777 other downstream 842696 11061655 ~ 11068318 (-) False AMCG00018437
TU145708 other downstream 1339012 10565795 ~ 10572002 (-) False AMCG00018431
TU145668 other downstream 1525798 10360129 ~ 10385216 (-) True G116307
TU145667 other downstream 1568925 10335201 ~ 10342089 (-) True G116306
TU146385 other upstream 1341749 13253085 ~ 13255769 (-) False AMCG00018522
TU146918 other upstream 2592067 14503403 ~ 14520875 (-) True G117267
TU147067 other upstream 2824802 14736138 ~ 14738312 (-) True G117377
TU147284 other upstream 3587326 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 3587326 15498662 ~ 15516282 (-) False AMCG00018617

Expression Profile