RNA id: TU146017


Basic Information

Item Value
RNA id TU146017
length 2621
RNA type TUCP
GC content 0.39
exon number 3
gene id G116585
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11966247 ~ 11970778 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCGGAGGCGCCGCCATAGTGGTACAGAGAGGAGCGGAAAGCTGGAAGACGTTTCTTCGCACAGAGACGGACGGCAGATGTGAACTACGAGAAAGAGGATTTGTTTGTAGTGATAGGTGTTCGTTTGGTTTGGTGGCATTTCGGAGGTTAAGGTAGAGTTTGTATTGCCACACAGAGTCGGTACTCTGGGTAGCTGTCTTTGTTTTGGCGGAGAGGAGGGAGGCCATTTTAGGCCCCactctctttgtttttctcccccccctattgttttcattatttttccgAGTTGGACTCGAGGGATCGTTGTCGGGCAAAAGGACCTCGTTCGGTTATTTATCCTGGATCAAGTGTTCATTGCTTTTCGCCACTGACTGGACTTCCTCCTGGATCAATTCGGAGAAGAAGAGACTTGCGTTGTTGATGATCTCTCAGCCCGGACATTGAAAAAAGCACGACACGGCGAGGCCTAGCACAACGCAGGCCGGGACACTGGCCGTACggtttaatattttttggtatttttttaaagcgaATCCGTCGCTAAAGAAAATACGGTTGGACGTTTTGTCTTTTGAGGATCGGGAAGCACACGGGGTCTTCTAAACTATGGTGGACTTTGAATAATGCCGTATTATAAGTACTTTGAGCTATTTCTTATGGTTGTTGTTGTACAATCAGGTTAAAGTTCCTATTCTAACGTAGTGTTGCTAACGTTCTGATTTCAGTTGATTTTTTGTGCTAGGTTTTGTGGCATTAGATGTCAGACTAAGCCTTCATTTAACAATGCAATACCTAGCTAGCTAACAGAGAGGATGCCTATCAAAACACATATCCTTGATTGTACATTTGCCTGATTGTTGAATTATCTGACTCGTATAGTGTAACCTGATTTCAATATGTCCTGTGTGCATTATAAATTCTCTTCCAAACTGAACTATGACACGGTCACGTTTGATGGCCTGCACATCACGCTGAGCGATTTAAAGCGCCAGATCATGGGTCGCGAAAAGCTCAAGGCGGCGGACTGCGACCTGCAGATCACCAATGCTCAGACTAAAGAAGAGTACACTGATGATGGCGCCCTTATTCCCAAAAATTCGTCGGTCATTATCAGACGAATTCCCATTGGAGGAGTCAAAACTACTAGCAAAACCTATGTCATTGATCGTACCGAACCTTCAAGTGGATCTTCAAAAGCagtatgtaaaacaaacactcacaatcttttcttttcattaagtATAGTTTAGTAACTTAAGCACACACGTATGTGCTTtcttggaatatatatatttatatattcagtatataacatttttaaacacccTTTGCTGTGAAGTGGTCAACTTCATGTGGTAGTACAttgtaacaatgtattttgtggaAAGGTTTAccaaaaaaatgcacatttgttaCTCTTGTGTAAATTGGTATTTGTGCAAGATAATGCActgtatttcatattgaaaaacCGGGTGAGGTTTTCCCCTTAAAACTGTTGTACAGATGAATGTATGATCATTTTGATCATGTTGGCAATGAAGTGAACATGACGGCATGTTCAAAGCTTGTCTGTCTTTTAATCTGTGTAAAAGCTGTTGTGTGttaatttctttccttttggtttttaataaaaatgttttaagcgTCATATCTTTCATTTGACATTGTATCACACAGCTTTGGTTTCTGACTATTGTCCTTGTTAAAGGACCTCTCTATTATAAGGCACAAGTCTTTAAAATAAGAAGGATTAAAattgtgtactgtattttttttttttttttttttaatgcaaaatgggTAATCCGTATTGGCAAAGGCTCTAACAACTAAGCAGACCCCTCTGAATAGGGGGCAATTCCTCATGTGTGGGGAATGAATCAGTCTATGAATGTTCATATTAAGAATACCAAAATCCAAACAAATCCCTTATATGGAAAAGCACAGTGCTTTTATAAAAGCAAACTAATTGGTCTAATACATTAAATTGGTCTTTATAAGTTAGACTAATTCCAGCATTGTAAGTTAACCATCTATATTAACTATATCTCCCTCTTTGTAACTCAAAgattacagtgcagtgacagccTTACAGGTGTTACTATGAGGGGGACAATTTTGTTTGCAGGTGAAAGGGGTTTGAAAGATTTGGTTCTGGAATGCTTTGTTGTtggttaattgaaaaaaatgtgtaatgcCTGATTGTTTGAGCCTTAGCTTCCCCCCCTTTTTTAccagatgtttaaaataaagggtGGTTTATAAATCATCAGAATAATACatagttacatttttatgacTGTAGAGCATTTAGTAAAACCAACACGAAAAATGtactttcacatttaaaatggttaatttCATCACTGATACATGGGTAACTATTCTTCAATATTGGAAGTGGATATGACACACTGCAGCCCCGGGCACACTGACACTTTACAGACTGCAAGATTTTAGTCCTTTTCTAGTAAAGTATCTGAGTAATTCAGATGTGTACTGTTTACACTATACCATCAGACTAACTCTTTAATACCCTGTATGATGCAGAACACATCCtttgtcaataaaatatatctgtCCATTTTGAGCACCTCTTACATGGCCTTGTGTGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145974 lncRNA upstream 148158 11728809 ~ 11818089 (+) True G116546
TU145884 lncRNA upstream 550509 11415481 ~ 11415738 (+) True G116479
TU145882 lncRNA upstream 554177 11410805 ~ 11412070 (+) True G116477
TU145839 lncRNA upstream 710082 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA upstream 710082 11252419 ~ 11256165 (+) True AMCG00018449
TU146048 lncRNA downstream 155672 12126450 ~ 12126699 (+) True G116601
TU146052 lncRNA downstream 168224 12139002 ~ 12140081 (+) False G116603
TU146053 lncRNA downstream 168224 12139002 ~ 12142135 (+) True G116603
TU146113 lncRNA downstream 301811 12272589 ~ 12273496 (+) True G116653
TU146114 lncRNA downstream 307652 12278430 ~ 12278840 (+) True G116654
AMCG00018471 mRNA upstream 66000 11855520 ~ 11900247 (+) True AMCG00018471
AMCG00018469 mRNA upstream 149199 11755834 ~ 11817048 (+) True AMCG00018469
AMCG00018470 mRNA upstream 288120 11677762 ~ 11678127 (+) True AMCG00018470
AMCG00018467 mRNA upstream 328197 11619373 ~ 11638050 (+) True AMCG00018467
AMCG00018468 mRNA upstream 359895 11595921 ~ 11606352 (+) True AMCG00018468
AMCG00018478 mRNA downstream 102327 12073105 ~ 12116828 (+) True AMCG00018478
AMCG00018477 mRNA downstream 180611 12151389 ~ 12163807 (+) True AMCG00018477
AMCG00018481 mRNA downstream 215912 12186690 ~ 12187328 (+) True AMCG00018481
AMCG00018482 mRNA downstream 224764 12195542 ~ 12202096 (+) True AMCG00018482
AMCG00018483 mRNA downstream 264233 12235011 ~ 12270627 (+) True AMCG00018483
TU145312 other upstream 2353329 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 2401843 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2724432 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 2764661 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 3271528 8693364 ~ 8694719 (+) True G115789
TU146176 other downstream 545025 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 1282565 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 1337120 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2049150 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 2075481 14046259 ~ 14049153 (+) True G117033

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050340 False 1339 mRNA 0.41 3 NC_007114.7 35406395 ~ 35408583 (+)
tiger barb (Puntius tetrazona) TU29615 False 5689 lncRNA 0.37 5 NC_056701.1 13698574 ~ 13705402 (+)
mexican tetra (Astyanax mexicanus) TU327293 False 2452 TUCP 0.41 3 NW_019171083.1 450205 ~ 453661 (-)