RNA id: TU146128


Basic Information

Item Value
RNA id TU146128
length 4967
lncRNA type sense_over
GC content 0.43
exon number 3
gene id G116667
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12287569 ~ 12319488 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTgtcttcaaatacatttttatttagtaaagtACCCTTCACATGGTCACCATAGAGCACTTGACAGATTGAATCACTGCTGGTCAGGTTTGCTTCAGTCAACAGAAAAATCAGTTTGAATGAGTGATGGTCACCAAATAGAAAGTCAGTGACACTGTGCACAGCTCATCACAGGAGCACACCACTAAGGAATGAGGTTTCCCTGAATGTTATGGcagtttacataaaaaaataaatgaaaaaaaaacgcCCTcctaaacaaactaaaatataaggaaccaaaaagaaaaatctgaaaaaacttAAAAGgcacatattaaaaaaatctgtattgttgcataaaataccaataaaaaggtcttgtatgtatttgaaaaatgacaGTCATTACTAAACCTAcatctgcagaaaacaaacacattacatataataaaaacagaaaattgcaATCCATTTAGTTCTGTtctgcaattcattttcaaataaattaatgcttttTTGGATGATAcatagcattatatatatatatatatatatatatatatatatatttataataaattagtcaCTTTAAATATTCTCTTTGCTCGATGTAAAAATAAGTGAAGGGCACGGAGTTGAATTGATCTGTGCATTGTGAAGACCGCTGTTAGGAACTCTACAAGATAtgcctttcatttaaaaataaaaatctgcaaGGTAAATGTAGCGACTTTTAATGATTCACCCTGGAATGGGAAAGTCTTAGAAGTTGTTTTTATCCTCTCAGGCCACTGAGGACCCATGTCTTTGTTTAAGCCTGACTGGATCATTAGGAGAGCAGGAGGTTCTATTGCACTGCAGCCACACGAGCCCCCCAGACCAGGGGGACGGAGGCAGACCCTCAGCACACGGTCCTGGCAGGGCACTGGGAAGAACGGGGGGCAGCAAGGTTTCCTCTGAATGGGGGGGGCAGGATGGCGGACCAGAATGCcaagtgctgtgctgtgatatCTGATTGTAAGTGTCTATGGATCGTTTGTATTTCCTGTTTATGTTTCTATGTTTTCTTTGACGTGACGTGGATAATGACACGCGCAGTGAAAAGCGGTGATGAAGAGTCACAGAGACAGTAACAGATTGCTCATGCGACATACCATTTGTGCCAGGGGTCAAAATAATAAGGCGGGGAAGTGAAAGGAGCTGAGGATGAGAGCAGGGGGTGCATGTGGGAGTGGTTGTGTCATGTAGCCTGTACCTTGCGTGTGAGGAGAGCACAGGGATCCTTCATCACATCACTCAGGGCCCTCTCCACACCCTCCTGTTAGCCCCAACGGCAACAATTACAGTGTGATCTGCCAGTTAGTCATAATTACACTGACAAAACCATCTACTCCCCCAAAACATTGAAACCCCAATACTTAATTTTTGCACTTCAGACCCATACTGTTCTCAGAAGAGCAATCCAAGTGCAGTTTCCCAGAGATGAGAAAATGAAAGCAGGAATGAAACATCTCTGGAGAACTGTCTGGTCTCTTCGGTAGATAAAGGGGTTGTGAGGATTTAAGACTTTCTGCCTGGAAGCACTGCATGGTCACCACCAGAGGGCAGGCTTTCTAAAAACATGACATGATATGGTAAAACTaccaacacactcacacacagacacaaaaacaagtCTTGGCCGGAACCACCAGATTCACTGGCTCAAGGGACTTCTTTGGAATAAGAACTCACTGTCTTCATTTAACATCACGGAAAGCACtgagaaaaacacaagaagctgGAATTGCACATTTGCCaagaccacaaaacacgatgGGTGCTGCGGACGTCATCCAGTTGctcaaaaacactaaaacatagCATCGTTTAACCAGCTTTTAATCCCAAAGTTAATTCAATCACTCTTAGCACCACAGTATGCAGGCCATGGAGCCGTTACTTCACCaggatttcactgagagagaacaTTAAATTGAATGGACCCTATTAATCTCTCACTGTAGAAGATGTTAGCATAAATATCGCAGCGGCTCTCAGATTGGTCGACAGCTTTGTAAATAGCGGCGgcatatgatttttttaacatgtgaGTAATTAATGTTAGCCCTCATCCAGACAAGAAGTGTCTCAAGGTCACTGTGGTCAGCATCTCCcatccaaatacttttgttaaGATGGTTAATATACTATAATGCCTGGAGTGGACCAATGGACCCCCATACTGCCCCGCCCCCCGCTCAGATGTAGGTGGGAGGATGAGTGAAGAAAGCAAAAGTGCAGGTACATAGCCATGGTGTCAATGTGGTTTCTTCAAAACCTGCACCTGTGAATGGCATTTCATCccgagagaaataaaaatatgaagtgATTGGAGAGTATTTAATCCTTTTCTTGAATTGGTCATTTTAACAGTTGTCATTTGGTGcatcacacactcactctcaaaCACACCTTATTTGTGcctttgaagtaaaaaaaaaagaacctaCCCTTAAATATTTCATACAATTGTTCAGataccacaataataataatattaataataatcatatttccAGCCTTCAAGCACCAGCATTGTTAGCAGGAGCAGACCCAGCAAAGACAGCACCATCTGCTCACAAAATCCCCACACAGGGAGAGGCTCTGCACCCGAGAGTCTtgcacacgcacacgtacacgctctcacacagacacagacacggcACTTGCAGGCGTCTGACACAGAAGGCAAATCGAGATCGGATTGAAAACACAACAGTGCACACTGCGACTACCGGCAGAACCAGGCGTTTGTGGTGTCATGCGGGATTAAGAGAACGATCGGAATAGTAAATGAAGTACATAATCTCCCTTTTGTGCCATATTCGAAgctaaatagaaaataaaaaataaaaataaaaaaggtggtAGAGAATAGATCTGTCTTAAACTGGGCACTGAGTCCAGCTGCAGTGAAAGCCCCTGTGCCCCCTCCCTCCTATCCACCCCTGTGCCACAGATGTATGTGTTAACACTGTGGAATGCTGGGTATTCAGAGTCCCAAAAGGAAATGGAAAGGACAGTTCTCTGTGCTTGCATTGGGCTGCCATAGCCAGCTAGCGGTCCAGTAGAGTACACCCATTACATACACTGAGGTGTGTGAGAGGGCGAATGGGAGAGCGGTGCCACCATGCTATGGCAGAACTAATCAATTTTGCTATTTAATTTCTAAATGCGCTTGATTGTCATAGACCAGGAGTGAGTGATTCCCGTCCTCAAAGGCCAGGGTCCTGCAGGTCATAAAGGTTACCATTCAATGGGCATCTGATTCAGACCTGGAAGAGATTTGACTTCTTACCCAAAGAATTACATCTCTAGAAGTGTTAAGCACCAGGTTTGGGGTCACTTCCACTTCCCTTTTCCAAACAAATCCAATTCTCCTTTTCAGAGCCCTTCTTAAttccaattcattttttttttctcttggcaTAACAGACATAATTGGAACGGAATTGAACCAGGAATTACAAACAGAACTGGAATGGATAAACTGTAATTGACCCCAACACTGTTAAAAACTGAGGGAGAATTAAAGCAGAAACCCCTTTGGCCCTGGAGGACTGGAATTGTTACCTGTGTTGTAGGCCCTGTATTGGAGGACGGGTGTGTAAAGTTTTGGGTTTGCATGCAGGCGATAGTGTGTCGGCTGCGCCTGGAGACGGGGTTACAGTAGTGCTGACAGCATTGCCATCTTTGATTCCCCTTTAAATCAGAGcgctgtgtgcttgtgtgcttCTCCTGCAGCATTATAAACTGTGGTTGCGTTGGCCCCAAGGCCGGGAAATACAGGGACAAAGTACAGACGGAAGACTTGCCCTTGACTTGTCAGCGCCCAAGGGTTGGCGGGTCAAGGGCCAAGGGTCAGACATACTGTACTGGTCCCACACTGTTGTTGACAACTTTGGAAGCCCACGTCAAGCTCACAGAGCTGTCTGCCGCTCAAACAGGAAGGAAAGGCGAACAGGATGTTCAAAACAACGACGACAGtaacaacaacacagacaaaCTTAAAAGTGTCCAACAGAAATTCTCCCACAGTTTACACTATCCTTCCCCTTCCGTGCTCTTTGTCTTAGTTTGGTGATAGTCAGTCATCCCGATTTCATCACTCTCTATATACTTGTACCATTTGCCCCCTCccaagaaagaataaaaaaaaatgaaactaaatatatatatttatatatatatatatatatcactgtaCTCACTATTTATTCTCTATaggagtttctttttttatgattgtAAGATATACTCTTCTTGCCTCATGCTTACAATTTATACATACCatatgttattattgtattatgttttaatgtatgcatttattttacaacaggTTTAATATTCCAATGTCATATAGAAAAAAAAGCCAACAGATTGTAACATTTGTCAAAAACAAAGCCTGCCcatcctctctgtctgtctgtctgtctgtctctgcctctgtgCCTCAAACTCaaactatttttgtttagtGCCATCCTGAGGTAATTCATTTGGGGTTCTGAATAACTGGAGAATTGTGCAAACTGtacagggggaggggggcttgTAATTCTAGCTAAAGGAAGGAGAGCACGGAGAAATGAgcaggaaggagagagggagaggaggagaaaggagaGTCAGAGAAGGGGACAGGAGGGAAAGGAGGTAGAAGAGACAGGAGAGGCGAGGGAGTCGGGGAGGAGAGCAGGAATGAGATgaagagaggaggaggtgagatggggagaggagaggagagggcaggggaaTGGATTTGGAGGCAGGGAGGGGTTCTGCCGGTAGTCCTTGTGCCCTTGTGCCCACACGGAGCCCTGAGGTTGTGCCGCAGCGGCGCTGACTGTGCTCTTCACTCCAGCATGGCGTCCAGCTGGTCGGCCAGGTCGTCGAACATGCTGCCGATGTCGTCCAGGATGCTCACTGTGCTCTTGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146114 lncRNA upstream 8729 12278430 ~ 12278840 (+) True G116654
TU146113 lncRNA upstream 14073 12272589 ~ 12273496 (+) True G116653
TU146053 lncRNA upstream 145434 12139002 ~ 12142135 (+) True G116603
TU146052 lncRNA upstream 147488 12139002 ~ 12140081 (+) False G116603
TU146048 lncRNA upstream 160870 12126450 ~ 12126699 (+) True G116601
TU146168 lncRNA downstream 177306 12496794 ~ 12500048 (+) False AMCG00018493
TU146185 lncRNA downstream 224057 12543545 ~ 12588656 (+) False AMCG00018498
TU146210 lncRNA downstream 381013 12700501 ~ 12700765 (+) True G116725
TU146213 lncRNA downstream 560098 12879586 ~ 12883914 (+) True G116728
TU146255 lncRNA downstream 585612 12905100 ~ 12958552 (+) True G116765
AMCG00018483 mRNA upstream 16942 12235011 ~ 12270627 (+) True AMCG00018483
AMCG00018482 mRNA upstream 85473 12195542 ~ 12202096 (+) True AMCG00018482
AMCG00018481 mRNA upstream 100241 12186690 ~ 12187328 (+) True AMCG00018481
AMCG00018477 mRNA upstream 123762 12151389 ~ 12163807 (+) True AMCG00018477
AMCG00018478 mRNA upstream 170741 12073105 ~ 12116828 (+) True AMCG00018478
AMCG00018493 mRNA downstream 169979 12489467 ~ 12500054 (+) True AMCG00018493
AMCG00018491 mRNA downstream 183535 12503023 ~ 12520331 (+) False AMCG00018491
AMCG00018492 mRNA downstream 211070 12530558 ~ 12539267 (+) True AMCG00018492
AMCG00018498 mRNA downstream 260954 12580442 ~ 12611879 (+) True AMCG00018498
AMCG00018497 mRNA downstream 299872 12619360 ~ 12648880 (+) True AMCG00018497
TU146017 other upstream 316791 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 2674651 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 2723165 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 3045754 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 3085983 9199657 ~ 9201586 (+) False AMCG00018358
TU146176 other downstream 196315 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 933855 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 988410 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 1700440 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1726771 14046259 ~ 14049153 (+) True G117033

Expression Profile