RNA id: TU146213


Basic Information

Item Value
RNA id TU146213
length 4329
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G116728
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12879586 ~ 12883914 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAACCGCTAATGAACTGTAGCCAGTGTGCAATAATTGATGTACAGGGGTTGGAtttactaaaagaaaaaaaaggcattgaGAGCAAAAAGTATCATCAGTTTCCCATGATGGTATGAGCCTACAAATCAGTCAATTTTTGTAGGGGTATTTAACTCAGGAGCAAAGGCTGAGCCGCTTAGTGAATTGGAGAGTCAATATGCAGTTCTTTGCTTGACATCATCAGTAAATCGCCCTAGATGCTTACTATAGAGTGGGAGCACTAAGGGTTTTATCCTGGACAAACAGTTTAGGACAGACGGATGTGTTACTGTACCACTATACAAAGACTTGACTTAAGGACATAGATGCCCAAgtccttttttcttctgaaaccaTAAATAAGCACAGGCAAAATGTCAACAGGGTTATCACAGCGGGCTCTATTCTCAaatcattaattttgttttacattcaattaaCCTTTGTTCTCCCATGAAGATACGACTGAATTAAACAAAGATCTGGAAAGCTTGGCACTTTACTGTTATTTACTTACAGATGGAAGACAGGAACAACTACATTGTAAACTAAGAAAATAGTTCTATATTATAGGCAGGCCTTCAAAATGAAACCTCACCCTTTGAAAAGCAGACAGACAAGCTCCAAAGAGAAATGGAGAATACAGGATAAATCAGAAGTAAGAGTTGACATGGTGACATGTAGAATCACACTTGGGGCTGAAAGAAGAGCGAACTGGGATGAAGACAAAGCCATCGAGATGCCTGTTGGATCGTATTCCCCGAGTGGAATGGAAACATTACACTATTCAAATTACCTTACATTTTGTGGGAAAGGCAAATAAGAGATTCAACCATCGTTTCGGTCTTCTCTAGATATCCCTCTTGGACATGTGAGAATAGAATCCACTGTGGTCAGTGCTTGGAGCATCTTTTGTATTATGTCAAGCCTCTGTGCGTATGGTTACTTCAGTGGAAGCAGTAACACATTGAGATGTTTCCCCTTGATACAGTCTAGATCCAATCACAAGACATTAGGAATCAGAGTTGTGTTCCCCAGACTTGAGTATGAATGGAAAATCAAAAACACTTAGTCTTATGAtcttggaaatgaaaaatgtatttccaataCAGTATGTGAACCATATACCTTCATGGTCTTTCCTTTGAAGTTGATATACAAGATGAAATAAGTCAAATTCACACCTGAAGCATATTAGTCAAGTTTGAGCTTTTTCACCCGTCATTCTTCCCTTGAAAGATTTCTCAGGTTGATTTCTTCCAGAAGAGACAACACGCTTGTCAGTACTCTCTGCCTGGCTGCTCTCGCCTGGGACTGAAATCCTGATAGAacgaacaaacacacaaacacaggaaagATTTAGGAAAGTGTCTTACAGGACTTGGTTATTACATGTCTGGAAGGACTGAGAAAGACCTTTATTTCTCCTCTTCTTTAAGCCCTAGCAACTGtatttgaaacaatacatttttataatcgGAAACTTTGGAattcaatataatattacattacagcCTTGATAATGTGCCTTTGGATTTAACTGCTGTAACATTTTTTAGGTATAGTGGCTGCTATATATCTACAAGAGGAGATCAATCAGAAACATTGTGTTCTTTCCTTTTGACAGTAGACCTAAAAATATAGAAGGGAAAAACTGTTGACTAATGAACACATATCTAAAACAGTGTGTAAAGTATCCTTATCAAATAGGAAGACTAAAGCtacttatattattaatattacaacaATGAGAAAAAGTCATGTTTCTATTCCAGCTGTTGCATGAGTACAGTATCCCTTATTCATTCGTACATAATACTACACTTGTGTTTATGATATCAGATTGCCAGACTGCATGGAAGGGAAGGgatgattttattattagtacACAGATTTATTCAGTAACCTGGTGGTTGGATTCAGGCTTTGCTCCAAAGAAAAGGCAAATTTATCtttctttcaaacaaactttAGTAAACCCAGCCCtcagcattatatatataggaagactatatatataatgtaaaataaaaaataaaaagtgtccTATAATATCCAGGTGTACTGTCTGCAATAATCTGCATAGAATTGTGGGAAACTAAGGAAGAAGGTGAAAGCTattaatattcaattaattgtatttttgcatttaaattattacttgTTATCATGtaatgatttaataattgttCTAGGTGATGTTCACTGTGCTCTTATGAAACTAGCTGAGCATTTTTTCTtaaagcaggggtgtcaaactagTTTTATAGAGATGGCTTTGTGAACTATTTCTGTGACGGACCTAGAGGCCTGTCATTTATACTATTCTACAAACCGATTTAGGATTGCATGAAGCATACAGACCCATCCATACGCATCCACATCTGTAAACATACCTATACATTTGGCCACATGTATAGTCCAATATATATTCCATAAACATAAAGAACATTCCAAATACGGTTCAAAGACTCCCCGTGAAATTGGCAGGAAGATGTTACCCTTTTCAAGATACTATAACATGTTATTGATTATACTTCAAATCAATGTCAGATACATACTGTTTTGTTGTATCCTTCCCTGGAGAGCTTTGTAACCCTTCATATACCTTCATTTGCTTTTCAATCCCcatacattttactgaaaatCATGAATTGTACACCTAATTATAACATATGGCTCTAGAATAGCACTTTTTTTGCAATACTATGCATGCTCACTTATTTCCTAACTGCAATCACAATGttcatgtgtaaataaaaaccCGGTGTACAGGAGGCTCTGTTAGCTACAACAGTAGGAAACGAtcctgtttgtttctgtgtaacTTAAAGCACTGATTGCTTTTGACAAATTACTGCTGGACTTGGAGTGGGCATCCATAATTAGGGATGCATTTGTATTGTCAGTGCATTTAGGGCTGCAATGCTGATCTGAGATCCCATTTCTTCAGCACGCCTGCTTCATTTgaacacaaaaaatgcaaatgatcaccactacagtatattacactcACCGAGTAGAATCCGCAGTATGGTTCAagatttttttgtatcagtATGTATTCATTGTGCCGCTGATAACTGTGAGATTCTCAGCTACAATCTATACACCATTGTGTTTCAGTATAAAGCTGTAGAAAAGACAACTTAAATCCTCAGTGGTGAGCCAGATCATCACAATCAGAAAATGCTATTTGGACTAAATCAAAGCCCCGTATCCAGGATATCCCCCAGGCCTGATGCCATTGAAAATTGTGAAATGGCACCAAATGTGATATTGTCTGTAGGCAACCActatgtttaaattactgtgcTGATCTGAACATTTAGGATTCTAACAATACCTGGCAATGGCATGTTAGAATGAAACAATGCACGAACGCATACAGCATGGTTTTCAATAAGGGCAAAATATGGAGTAGGTcacaaagtgatttttaaagcctGATTAATGTAATCAAGCCACTTTATGTATGTTTGAGGGTGCATAAGGTAAAAacttgatatatttaaatataaacccTTTGAAAGGATGTTATTAATTGACTTGCATGAGTTTTTAGAAATTACCAGCTTCttatttgaaaatcatgctAATTGTGGCCATGCATTCACTAACGCCAAGTAGATTCAAACAGGGGGAACTGcaaaaactatttacaaatattccatgtaaggtttttatttgggtttttcttttaattacatttcagtcttTTACAGACCAGACAGGTTATGATATGCTATGGTGATGTTGcctcctagtaatgaaacagtgATATCAGGTGTCACAGAGGCTTTATGCACTAATTAATTCTTTCAGaagggtgtgagtgtgtgagtgtgtgtgtgtgcattctgaatagtttggacctcttcaaccttccttttaaatgtcagtgtatTAAGTTCCATTGTTTGAATAATATAAGGTTAAATCAACCCTGTGAAAATTGTCTGGAGAACTTAAAGTGTAAAATGAGGGGGTGTGTAGAAACTACCAGGAATgctaatttatgtttttgtttgtttgtttggtctgAAGTTTATGGGCTGTCCTGTCTCAGTGTTCAGACCTTACTGAGCTGTTATCATGTCGGCCACACCTAGCCCTTAGACTGTCTGCTTGACACCCCTGCTTTGGAGTCACAcagtacacaataaaaaattgaaCTATTCCTgtaatttaacttttaactGTTGTTTCTGTACTGATTTTTGGTTTCTTGCTGATAACCAGGTAATACCAAACagatttttatcattattacaattattattattgcttcaaCGTGCACAGAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146210 lncRNA upstream 178821 12700501 ~ 12700765 (+) True G116725
TU146185 lncRNA upstream 290930 12543545 ~ 12588656 (+) False AMCG00018498
TU146168 lncRNA upstream 379538 12496794 ~ 12500048 (+) False AMCG00018493
TU146128 lncRNA upstream 560098 12287569 ~ 12319488 (+) True G116667
TU146114 lncRNA upstream 600746 12278430 ~ 12278840 (+) True G116654
TU146255 lncRNA downstream 21186 12905100 ~ 12958552 (+) True G116765
TU146256 lncRNA downstream 21186 12905100 ~ 12919130 (+) False G116765
TU146261 lncRNA downstream 49026 12932940 ~ 12934564 (+) True G116769
TU146267 lncRNA downstream 163203 13047117 ~ 13048094 (+) True G116775
TU146286 lncRNA downstream 245824 13129738 ~ 13215352 (+) True G116790
AMCG00018502 mRNA upstream 705 12836224 ~ 12878881 (+) True AMCG00018502
AMCG00018501 mRNA upstream 60443 12784691 ~ 12819143 (+) True AMCG00018501
AMCG00018500 mRNA upstream 141518 12714107 ~ 12738068 (+) True AMCG00018500
AMCG00018497 mRNA upstream 230706 12619360 ~ 12648880 (+) True AMCG00018497
AMCG00018498 mRNA upstream 267707 12580442 ~ 12611879 (+) True AMCG00018498
AMCG00018503 mRNA downstream 1273 12885187 ~ 12904501 (+) True AMCG00018503
AMCG00018507 mRNA downstream 50682 12934596 ~ 12943295 (+) True AMCG00018507
AMCG00018508 mRNA downstream 74798 12958712 ~ 13031788 (+) True AMCG00018508
AMCG00018506 mRNA downstream 149092 13033006 ~ 13043686 (+) True AMCG00018506
AMCG00018511 mRNA downstream 203547 13087461 ~ 13088726 (+) True AMCG00018511
TU146176 other upstream 359705 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 908808 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 3266668 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 3315182 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 3637771 9239811 ~ 9241815 (+) True AMCG00018360
TU146344 other downstream 369429 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 423984 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 1136014 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1162345 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 1257463 14141377 ~ 14145578 (+) False AMCG00018538

Expression Profile