RNA id: TU146286



Basic Information


Item Value
RNA id TU146286
length 533
lncRNA type read_through
GC content 0.36
exon number 2
gene id G116790
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13129738 ~ 13215352 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caaaaaaaaaagcaaaaaaaaaaaaaaaaaacttaatacaATATCCTTTCAAGTCAGAATGCTTCTAGCAGatgtttaaaaccatttttCCAAATTCatgaaatgcattcataatttaaGCTTAATGTAAACTTAGAGGGGTGGAGCAAAACATGGAAAAAGACACAGAATGTTGTATATTCAGGAAATGAATTATGCCAAGAAAATCAAGGGTGATAGTAAATGTGTCTTCCACCTACTATCCTTAACTTTTACTGAAGTGTGAAGTAAAAGTTGAATTTGGCCTTTTAGAGGTTTCCTGTTCACTAAACCCACTAAAGGACAATATCTAGATTCTGCCAGACCTACAAATCTGATAGTTTACAAATCCGGCAATCCAGGCATTGGAAATCTTCCGGCAAAGGCTTCCACCTCTTCACGGATCCGTTTGATTTTCGTTTGGTATTTCTCATCTTGTGCCAGCTTGTCCTTAAACTCCTTCAGTGTGGCCTTGGGGTTCATATCCTTCTGAATCTCAACTGTCAGCAGAATGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146267 lncRNA upstream 81644 13047117 ~ 13048094 (+) True G116775
TU146255 lncRNA upstream 171186 12905100 ~ 12958552 (+) True G116765
TU146261 lncRNA upstream 195174 12932940 ~ 12934564 (+) True G116769
TU146256 lncRNA upstream 210608 12905100 ~ 12919130 (+) False G116765
TU146213 lncRNA upstream 245824 12879586 ~ 12883914 (+) True G116728
TU146409 lncRNA downstream 151288 13366640 ~ 13367028 (+) True G116882
TU146490 lncRNA downstream 450671 13666023 ~ 13691367 (+) True G116941
TU146532 lncRNA downstream 624364 13839716 ~ 13839971 (+) True G116975
TU146533 lncRNA downstream 631538 13846890 ~ 13847092 (+) True G116976
TU146591 lncRNA downstream 805291 14020643 ~ 14022806 (+) False AMCG00018537
AMCG00018510 mRNA upstream 6352 13100603 ~ 13123386 (+) True AMCG00018510
AMCG00018511 mRNA upstream 41012 13087461 ~ 13088726 (+) True AMCG00018511
AMCG00018506 mRNA upstream 86052 13033006 ~ 13043686 (+) True AMCG00018506
AMCG00018508 mRNA upstream 97950 12958712 ~ 13031788 (+) True AMCG00018508
AMCG00018507 mRNA upstream 186443 12934596 ~ 12943295 (+) True AMCG00018507
AMCG00018516 mRNA downstream 19849 13235201 ~ 13237686 (+) True AMCG00018516
AMCG00018515 mRNA downstream 31182 13246534 ~ 13252245 (+) True AMCG00018515
AMCG00018520 mRNA downstream 105998 13321350 ~ 13346877 (+) True AMCG00018520
AMCG00018523 mRNA downstream 253541 13468893 ~ 13534827 (+) True AMCG00018523
AMCG00018526 mRNA downstream 424371 13639723 ~ 13649092 (+) True AMCG00018526
TU146176 other upstream 609857 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 1158960 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 3516820 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 3565334 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 3887923 9239811 ~ 9241815 (+) True AMCG00018360
TU146344 other downstream 37991 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 92546 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 804576 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 830907 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 926025 14141377 ~ 14145578 (+) False AMCG00018538

Expression Profile