RNA id: TU146344


Basic Information

Item Value
RNA id TU146344
length 1528
RNA type TUCP
GC content 0.40
exon number 3
gene id G116832
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13253343 ~ 13255794 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAAGTATCTTACACAACACATTataggtttattttgtttcttggtcACAAACTTGACTTTgtacacaatacagaaaaaagggCATGCTGTTCTTGCCACTGTAGTCCGCATGAGAAGGCCTGGGCCCGAGCTTAGTGGTACTTCCTCCAGCGGTCGTGCTAAGATGTTCCCTGTCCCAGATGTAGCTCACAACTACATAGCCTGCCAGAAGCATAGCAATACCACCAATGCCACCCTTCTTGACATTGATGTACTTGTTATAATATCTGTCATGCCCTGCGAAGGGCAGAGAGGACTCCACTGGGAGAAAAGTCCCGGCTGCCAAGCCAGGCTGGGAACTCTCCCAGCTTCACCTCCAGAAGCCTCCTCTCAGAGATGGGCACTGCAAGGCAAAGAAACAGCTGTGAGGAGAGTACCAGacctatattaaaattatatatatatttatatataaagtctTTGTGGTGCAGAAATGCTCtttactaaaataatgtatttattttctgtgtgaattTTACAGAATCACTATGTTGACAGCAGTACACTCTCTTAAAACCAGTCTCTCAAATTGGTCTCTAATTGTTATATGAATGAGTGGCAGGCAGGTAAAGGGTTAAAGAATACAGGGGTATATAAGTtgactaaaataaaaccttccaTAAAATGATATACAGCTCAAGAGAAACCACTTGAAGAAATCTAGTACGTAAAGAAGCTTGCATTTAGGACCTGGTAAATCAGAATGTGGAAGTATGTAGGCCTAGATATGTTTGGGtatggtttattattaattagccTACTTTCTATTACAATGCAGAATTACCGAACACCTGCAAGCTAGTTGTCCAATActtgtattcaaatgtattacacaATTAGTCCTTCGATGTGGTGGGTGTACTTGAGCAGAATAACCCTGTcgtgtgtgtatattattgtactgtgattaattaatttaacaaggATACTATTAACTACGGTGTTGCACGATTAGATACCCTGCCGTTTACTTCATCAAACAAAAACTCCATTAGGATCAACCTGACCCAACAGCTGCACAATGTGTAACAATTTCAGACTATaataacatctttaaaaaagaCCCATCTGCATGTCAGGTTTGTGGTtcattactttttactttttagatATAGTCAACAATGAATGACAGTAAAGTCCTGCCCTTGACTTGACTCGGTTAGAAAAATGGATCCTGCGCGGCCTTGAACAGCACCTACGATAGACATAGCAGCCGTAAAGCAATATTAAGTATGCAAACATTTTCTAAAGTTTAAGTCcgtttaaaaatgcaatgcatatataactatttaaatacaacatCACAGCTATTTGAATGTACTGATGTTAGACACGCAACCTTACCCGGTCTATCAGCCATCTTGCTACACAGTGTGTCTTTGACGCTAAGACTTGTGGGAAACAGCTTCCTGAGGAGAGGCATTATGGGAATGAGGTCTAAACGTAGCCGAGCAGAAATGAGCGAATCGTCGGCTTCATTTGGGTAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146286 lncRNA upstream 37991 13129738 ~ 13215352 (+) True G116790
TU146267 lncRNA upstream 205249 13047117 ~ 13048094 (+) True G116775
TU146255 lncRNA upstream 294791 12905100 ~ 12958552 (+) True G116765
TU146261 lncRNA upstream 318779 12932940 ~ 12934564 (+) True G116769
TU146256 lncRNA upstream 334213 12905100 ~ 12919130 (+) False G116765
TU146409 lncRNA downstream 110846 13366640 ~ 13367028 (+) True G116882
TU146490 lncRNA downstream 410229 13666023 ~ 13691367 (+) True G116941
TU146532 lncRNA downstream 583922 13839716 ~ 13839971 (+) True G116975
TU146533 lncRNA downstream 591096 13846890 ~ 13847092 (+) True G116976
TU146591 lncRNA downstream 764849 14020643 ~ 14022806 (+) False AMCG00018537
AMCG00018515 mRNA upstream 1098 13246534 ~ 13252245 (+) True AMCG00018515
AMCG00018516 mRNA upstream 15657 13235201 ~ 13237686 (+) True AMCG00018516
AMCG00018514 mRNA upstream 57146 13187923 ~ 13196197 (+) True AMCG00018514
AMCG00018509 mRNA upstream 87198 13162657 ~ 13166145 (+) True AMCG00018509
AMCG00018510 mRNA upstream 129957 13100603 ~ 13123386 (+) True AMCG00018510
AMCG00018520 mRNA downstream 65556 13321350 ~ 13346877 (+) True AMCG00018520
AMCG00018523 mRNA downstream 213099 13468893 ~ 13534827 (+) True AMCG00018523
AMCG00018526 mRNA downstream 383929 13639723 ~ 13649092 (+) True AMCG00018526
AMCG00018527 mRNA downstream 526920 13782714 ~ 13785549 (+) True AMCG00018527
AMCG00018530 mRNA downstream 604101 13859895 ~ 13878065 (+) True AMCG00018530
TU146176 other upstream 733462 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 1282565 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 3640425 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 3688939 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 4011528 9239811 ~ 9241815 (+) True AMCG00018360
TU146394 other downstream 52104 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 764134 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 790465 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 885583 14141377 ~ 14145578 (+) False AMCG00018538
TU146688 other downstream 933209 14189003 ~ 14191077 (+) True AMCG00018553

Expression Profile