RNA id: TU146490


Basic Information

Item Value
RNA id TU146490
length 1619
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G116941
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13666023 ~ 13691367 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acaattctATTGAACAATGTATTAAAAGGCATTACTTATGGTTCCCATGTCTCAAATTACAGTTCTGTTCCACTCAAGGTTGTGTGCATATTCTACAGACTAGAGATGAGTGCATTTCATTGCTtctccaaaaaactaaaaactgaaaacctgAAGAATCttcaaaaacaacactttatttacaaaacccacgtgacattttgtaatttaacagTGGAACAGTAATGAGCCAACACACCCTGAAAAATTGTACTTAAAATCACATGCGTCTCTCAATTTAAAGTGTGCAAATGGTGTAGTTTTAAGGCAAATCCTAAAGAACGCTGCTCAGAGTCCTGTGTATGTGACATACCGGGACACTAATTTAGCACAGCAAGgaagtatatattaaatacactaaAAGTAAACAATGCTGACTTTCAACCTCATCCCTGAAGAAACTCTGATGAGAAAGGTATCGCAAAGTCTTACTGGCAGAACTCTGGATTCTGATTGGgtactgtattattaaaatgaaaaaacgaCTGTAGAACACAAACCCTAAAACTAAGAACAGTGTGACTAGTTGCTAGAGAATTTGAATTGTTAACAGTTAATATTGAGTAAGTGATTTATCATTTGTTGGTAAAAAAGGGGACTGGAGATGGACTTCCAAAGCTTCCTAAGCTGGTAGCTACTTCCTGGCAACCCAACTTTCCCTGTGTTTGAGACTGAGATGCTACTTAAACTGCCTTTACTGGGAATGTGGTGTGGTAACTCATCTttgtgaatatattattttgtcatcTTATTTTAGAACTCCAGTGAGCACCAttcattctgaaaatgttgTGGTTTTGGTaccattttttgtttccttcctttCATCCCTAATATCTGTGCTTTGGGCTGGTCAGCATTCACTGAAGGTGTATTTTGTGCTCTGTAAGAttgtaaagaaaagaaatgtagaCAATTTACTGGACTCAGCTGGGCTTTACAGGACAGACATCAGGgtgaacatttttgttgttcaaGCTCTGTGGGGAAAATAGTACAAAATAACACCACAGGGGTAAAGCACTTCTCCTTTGTTTTAAAGCAGACTTTTCTTGTAACAGTTTTGTACTTAATAAAACCTAAAACTTCAAAGGTCTGAATTCCAGCATTTAAATGGAGGTATTTAGATCCACTACTCAGAATCAAatctaaaattgtatttgcCATCTCTTCATGCCCTGCCTAAGTGtgtaaaaatttaaaatgttgagaATCAGTTGAAGATGGTTTTATTGCACTGTAACACAATGTTAGTTTCCACGTATGCTTTACAACTTATGTTAGCAGCATTATATGATTTTGACGTGCAAGCTCTTGATAAATGAAATAggttaaaaaaaggtttgttgCGGTTTACGCATGTGTTTGGGGACAGAAATATTCTACCTTCATCAACACtgtaagcaaaataataaaaggcatGAAGGAAAACTAAACCCCctgtcaaatatatatactttaggTTTAAGATAATTAAAGTGTCATTCTAAAACTTCAACTGAAAAAACTGACTGGACCATGATTGCACCTCCTGGAAGCACACTTGAtgtttcctaaaaaaaaaaaaaaaaaaaaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146409 lncRNA upstream 298995 13366640 ~ 13367028 (+) True G116882
TU146286 lncRNA upstream 450671 13129738 ~ 13215352 (+) True G116790
TU146267 lncRNA upstream 617929 13047117 ~ 13048094 (+) True G116775
TU146255 lncRNA upstream 707471 12905100 ~ 12958552 (+) True G116765
TU146532 lncRNA downstream 148349 13839716 ~ 13839971 (+) True G116975
TU146533 lncRNA downstream 155523 13846890 ~ 13847092 (+) True G116976
TU146591 lncRNA downstream 329276 14020643 ~ 14022806 (+) False AMCG00018537
TU146732 lncRNA downstream 550750 14242117 ~ 14242717 (+) False AMCG00018551
TU146733 lncRNA downstream 551497 14242864 ~ 14244203 (+) True G117130
AMCG00018526 mRNA upstream 16931 13639723 ~ 13649092 (+) True AMCG00018526
AMCG00018523 mRNA upstream 131196 13468893 ~ 13534827 (+) True AMCG00018523
AMCG00018520 mRNA upstream 319146 13321350 ~ 13346877 (+) True AMCG00018520
AMCG00018515 mRNA upstream 413778 13246534 ~ 13252245 (+) True AMCG00018515
AMCG00018516 mRNA upstream 428337 13235201 ~ 13237686 (+) True AMCG00018516
AMCG00018527 mRNA downstream 91347 13782714 ~ 13785549 (+) True AMCG00018527
AMCG00018530 mRNA downstream 168528 13859895 ~ 13878065 (+) True AMCG00018530
AMCG00018534 mRNA downstream 194413 13885780 ~ 13902661 (+) True AMCG00018534
AMCG00018533 mRNA downstream 250261 13941628 ~ 13960988 (+) True AMCG00018533
AMCG00018536 mRNA downstream 281183 13972550 ~ 13985601 (+) True AMCG00018536
TU146394 other upstream 337751 13307898 ~ 13328272 (+) False AMCG00018520
TU146344 other upstream 410229 13253343 ~ 13255794 (+) True G116832
TU146176 other upstream 1146142 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 1695245 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 4053105 9609077 ~ 9612918 (+) False AMCG00018380
TU146594 other downstream 328561 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 354892 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 450010 14141377 ~ 14145578 (+) False AMCG00018538
TU146688 other downstream 497636 14189003 ~ 14191077 (+) True AMCG00018553
TU146730 other downstream 548131 14239498 ~ 14242037 (+) False AMCG00018551

Expression Profile