RNA id: TU146602


Basic Information

Item Value
RNA id TU146602
length 1732
RNA type TUCP
GC content 0.40
exon number 3
gene id G117033
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14046259 ~ 14049153 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacaaaggaTACGttcacatatataaaaaaaataaacaaatatgaaggtccaagaaaaaaaaaaaattcacacaaatacaattcagtCTCTGTGCTATCAGGATGTACCGTATGTATTGCCAGAGATGCTGGTGACGGGGAGAGCATGTTTCCCGTTCTGAGTGACAGGCCTAACAGGCAGCTGGTGCTGGCCCAGAGAGATGGGTGCCGCCTGTTGCACGATTGTGAAGGTCTGTCCAGTGCCGCCCTGGCTGACATGGCTGCTCACTGCCTGGATCACCCGGCTGGCAGTTGGGATTGTTGTGTAGGTCACCATGGGCTTCTCCTCTCCCATACCTGTCATCACAAACACTCCATCACACACCTGCCTTCTGGGACTCATACAAACTGTATCCCAAAGTGCTCCCCTTGTCACCTTCCCTTGCACGGTGGAagtagtttttttaatgaacaactAAAATGGGTTCGTTTGAAttcaataataacattattccTGTTTATAAACAGAACACTACCAGCCTAGAGTaactaaaaaaaatagttcTCCACGCAAtccactttattttttccatgaatTCAAGATGGGAAACGACATCTTCTGCAGTACAACTACCATTTCCTGAAAACTGCAGTAGGTAGCAAAAATAAAAGAGTGCTAGTTCACAGTACATGTAtaatgatataatggcaagtaaacactgctttatgatgaaaactaaaaacaaatagaaaaatgccatcaacacatttatacatttctcatttcggggataatttgaaaataattgattattgCCTTAGCTACTGTAACAACATATTACTTAAAATTGATTTAGTCTTTCTTTACAAAAGCTCTTCAGGGATAATTCACATAACCTTTTTTTGATATCATGTTTTACAGCGGTCATTCAGACAGCATTTACAAAAagtgattattataattataataaactacatatttcagcatttcagtGCGTTTCTTGAGTATGACCATATAATGCTTAGACCGGACAACACTGGCAGACCATTGGTGTGAAGCTGGGTCTGAGTGTTGCAGCACATCTCACTGAATACTTTTTGCTCTCTCTACTCCCTCGGTAATGCAAGTCCACACTCTGTGTTGTCAGTAAAACTCTTACTGAAGGCAGTAGGGAAGTGACTTGGGGATGCAGCCCCTATATATTCTACTACTTCTTCTAGGTGGTCTGTCAATCTCACCATATGAGCTAAAACAGCCTAGTCCTACTTCTCCTTCCTCTTCACCCCCTGCTCATCAACCTACTTTTATTAATAGTAtcattatttcttggcagatgcccttgtccagggcgacttgcaGGTTCTCAGCTGATGAGTGACTTTCTCCTCTAAAAGCTCTGAAATTCAACAAACCTTCCCTCCCTCAATCCCTTCATGCAGAACCTCAATCACCCTTGTGGGTGGACTGCGAATATTGAGGCTGAGATCAAATCAAATCTAAGATTCAAGTTAGAATCACAGATTCTGCCTGAATGCACATAacgatttaatttaattcccatAGTGGAGTAAATCCacaagaaattaaacaataaaatgaaaaagctaaAGTGAAGAAAGAAGTTGCCAGAGTAAAACACAAATCAACCACATACTGATAATGACACCCTACCTTCACcaattgatatatatacagtgagggaaaaaagtatttgatcccctgctgatttttatgtttgcccaatgacaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146591 lncRNA upstream 23453 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 199167 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 206288 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 354892 13666023 ~ 13691367 (+) True G116941
TU146409 lncRNA upstream 679231 13366640 ~ 13367028 (+) True G116882
TU146732 lncRNA downstream 192964 14242117 ~ 14242717 (+) False AMCG00018551
TU146733 lncRNA downstream 193711 14242864 ~ 14244203 (+) True G117130
TU146734 lncRNA downstream 195555 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 281688 14330841 ~ 14399539 (+) True AMCG00018564
TU146746 lncRNA downstream 359978 14409131 ~ 14412255 (+) False AMCG00018567
AMCG00018537 mRNA upstream 24193 13997909 ~ 14022066 (+) True AMCG00018537
AMCG00018536 mRNA upstream 60658 13972550 ~ 13985601 (+) True AMCG00018536
AMCG00018533 mRNA upstream 85271 13941628 ~ 13960988 (+) True AMCG00018533
AMCG00018534 mRNA upstream 143598 13885780 ~ 13902661 (+) True AMCG00018534
AMCG00018530 mRNA upstream 168194 13859895 ~ 13878065 (+) True AMCG00018530
AMCG00018547 mRNA downstream 62551 14111704 ~ 14111910 (+) True AMCG00018547
AMCG00018538 mRNA downstream 94015 14143168 ~ 14145995 (+) True AMCG00018538
AMCG00018539 mRNA downstream 110510 14159663 ~ 14161738 (+) True AMCG00018539
AMCG00018553 mRNA downstream 140789 14189942 ~ 14191067 (+) False AMCG00018553
AMCG00018549 mRNA downstream 142985 14192138 ~ 14200344 (+) True AMCG00018549
TU146594 other upstream 23453 14019928 ~ 14022806 (+) False AMCG00018537
TU146394 other upstream 717987 13307898 ~ 13328272 (+) False AMCG00018520
TU146344 other upstream 790465 13253343 ~ 13255794 (+) True G116832
TU146176 other upstream 1526378 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 2075481 11966247 ~ 11970778 (+) True G116585
TU146633 other downstream 92224 14141377 ~ 14145578 (+) False AMCG00018538
TU146688 other downstream 139850 14189003 ~ 14191077 (+) True AMCG00018553
TU146730 other downstream 190345 14239498 ~ 14242037 (+) False AMCG00018551
TU146792 other downstream 295937 14345090 ~ 14347741 (+) True G117178
TU147075 other downstream 726636 14775789 ~ 14776494 (+) False G117379

Expression Profile