RNA id: TU146733


Basic Information

Item Value
RNA id TU146733
length 1312
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G117130
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14242864 ~ 14244203 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGAATATGCCCCCCCACTGAGAGACAAAGAGGTTCCTGAGAGAACAGGGAGTATAGTCCCACACAGCCATGTtcaatggaaatacattttactgcttTTGTTCGCAAAAACACCAAAGCCAAGaaccagagaggagagagaataattaatcaatcaaccaataaattatgaaaatgctcAATAGAACAACCGATAAACCAACggaatgtaaatgttttacagcAGTCGCTCTCTTCCTGCTCAGATAGATGGACGACAGCAATACAAAACTCACTTTCATGTACACACATTCACTGAACTCAGTGTCAGTTAATCAATAATCTTACAAATAATCATGAGTAATAACTCAGGCATTAACAaatggactggactgctgcagagtcactgactggactggactgtgcaGTGTTGTGCTATAGCGCAGTGTTGTGCAATAGAGTGCTGTGCAGTTTTGAGCaattgtgcagtgttgtgttatAGTGCATGTAGTCTGGGTCGTTGGGCAGGAGGAGTGTGCTGTACAGGACAGATTGTCCCAGTCCAGAGAGTCCAGTGCAGAATAAACACTCCCCAGTCAGTCCACTGGAGACATGGTCCACAGAGAAGCTATCCTTGGAAACTACGGGAGATACCATCCACAACAGTCCACAGTTCACTAAAGACAGTATCCACGGAGTCCCACAGTCCACTAGAGACAATGTCTGCAGAGTTCCACAGTCCACTAGAGGCAGTGTCCACAGTGCACAGAGTGCCTGAGTCTCTCCGGCAGGTGCAGAGGGGCCAGGCTGTGCCCCACTGTCGGCACAGCTGCTGTTCAGCAGAATATCACAGCTGCTGAAATAGGCGACCCAATGTGCCTGAGAAGAAAACAGTGCCCCCTACAGACAGGGCACAAGACCAGTGACAGCAGagctcagaacaggtccctgtCTGTGGGTGGGGGTTTGGCCAGTGTGGCTCCGTCACAGTGGAAAGAATCacgcaacaaaacaaacaagtcctGATCCCAGCCAATATACCATACACTATGCCCTCctggggacagagagggacagaatgAGAGACAGTAATACAGTGAAACAGACTGACAAtgtgacagacagagagacacacagatagGGAAATAGAGAGCCTGCCCCTTCCCCTCCAtcactgtccctctgtctgtctgtctgtctgctccctctatccctcccccctccctccctcgctcgcTCATCGCCCAGGGCTGAAGATGTAGTCCAGGGCTTGTCTCTCAGCTGCCGCTACGTTGGGGTGCCACAGGTCCACCATGAAGACCACTCGAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146732 lncRNA upstream 147 14242117 ~ 14242717 (+) False AMCG00018551
TU146591 lncRNA upstream 220058 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 395772 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 402893 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 551497 13666023 ~ 13691367 (+) True G116941
TU146734 lncRNA downstream 505 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 86638 14330841 ~ 14399539 (+) True AMCG00018564
TU146746 lncRNA downstream 164928 14409131 ~ 14412255 (+) False AMCG00018567
TU146814 lncRNA downstream 193789 14437992 ~ 14439091 (+) True G117197
TU146834 lncRNA downstream 289760 14533963 ~ 14534200 (+) True G117209
AMCG00018551 mRNA upstream 599 14239242 ~ 14242265 (+) True AMCG00018551
AMCG00018550 mRNA upstream 4915 14232722 ~ 14237949 (+) True AMCG00018550
AMCG00018552 mRNA upstream 10550 14230990 ~ 14232314 (+) True AMCG00018552
AMCG00018549 mRNA upstream 42520 14192138 ~ 14200344 (+) True AMCG00018549
AMCG00018553 mRNA upstream 51797 14189942 ~ 14191067 (+) False AMCG00018553
AMCG00018558 mRNA downstream 116833 14361036 ~ 14367961 (+) True AMCG00018558
AMCG00018568 mRNA downstream 144823 14389026 ~ 14389346 (+) True AMCG00018568
AMCG00018570 mRNA downstream 148106 14392309 ~ 14393844 (+) True AMCG00018570
AMCG00018564 mRNA downstream 150800 14395003 ~ 14399115 (+) False AMCG00018564
AMCG00018569 mRNA downstream 160203 14404406 ~ 14406978 (+) True AMCG00018569
TU146730 other upstream 827 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 51787 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 97286 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 193711 14046259 ~ 14049153 (+) True G117033
TU146594 other upstream 220058 14019928 ~ 14022806 (+) False AMCG00018537
TU146792 other downstream 100887 14345090 ~ 14347741 (+) True G117178
TU147075 other downstream 531586 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 542420 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 710361 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2824009 17068212 ~ 17069670 (+) True G117786

Expression Profile