RNA id: TU146792


Basic Information

Item Value
RNA id TU146792
length 1631
RNA type TUCP
GC content 0.62
exon number 3
gene id G117178
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14345090 ~ 14347741 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGTGGCTGTGTGTTGCTTCCTGCCGTAGGGGCGTGGGGGGGCAGGGTGGTGTGTGTGCCATCCTGAGGATGGGACCAAAAGTCAGAGGGGTCCTCAGATGGGGCAGCATAGCCCTGCCTGCGCGCCTCGGGGCCGGGGAGGGGCTCCTGACCCAGCTCCCTACTCCAGGGGCCGGTCGAGCTCGGAGATGCTGGGTCCTTCGGCACAGTGGACCAGCGCTGCTGTGGGAACTGGTTCAACTCAGCCCTCGGGTGCTGGCTGAGAGTGTGGTCGGCAGTGGGGGTCTGGGGTCCTGGGTCCTGACTCTCCCACCCTGcccctcgtcctcctcctccttccttcACTCTGGTCTCCCAGAAGGCCTGCTGAGAGGAGGAGATGGGAGTGTCCGTGCGGGGGGTGGTCGGCGCTGCATTTCTCCACTGGCCCACGCCCTTCTGGATGTCAGCGACTGACAGGACCTCCTGGGGGGATGCCGGGGCTGGGGGGGCGGCGGGCCGGTACTCATCGCGGAATGAGTCGATGTCCAGAACCGGGGGCCTGTAGGGGTTCGGCTGGGATGGGCCGCCATCTAGGGACAGGGAGTCCAGGTCCAACACGCGGGGCCTCAGCTCCGCAGTGTCCAACGCAGTGCTCCTGCCGGACTGGGTGGTCCGGTCCTTAGTGCCCCAGCGCCGCGGCTTCACAGAGAAATCATCAAAGGCCACCTCTGTGGCAGGATCCGCCCCTACTCCTGGGTCAGCACTTCCCCTGCTGCCCACCCCAGGCCCGTCCTGGATCTGTCCCGTTAGGGCGAAGTAGGTGGCTCTGGGCCGAGTGGTGGCAGTGGTGGGATCGGCCAGctccctctgtcttagcctgtCCCTCTCTAGCTCTCTCAGCCTGTCCCTCTCTAGCTCTCTCAGCCTGTCCCTCTCTAGCTCTCTCAGCCTGTCCCTCTCTAGCTCCagttctctctgtctctccatctctctctgtctctccctctccatctctatttctctctgtctctgtctctctcgctctctctccagagctctcttttcattttctctctgtcgctccatctccatctctctcagtctttcttgctctctctccatctccttctctctctgcctctcttgctccacctctctctccctctgccacTCTGTGGAGGGGGTGTCTCCGTCTGTCTGTGCTGTCCACTTCGGCAGCGCCCCCACCCTGAGGTAGCGAGGCCCTGGAGCAGCTCTATCCCAATCACCCCTGTTTTTGTCCAGAACCTCAGGAAACTGTGGATTGCTCTCCTTCTCTAacttcctctgtctctccagctccctctgtctctccttctccctctgtctctccttctccctctgtctctccttctccctctccagctccctctgtctctccagctccctctccagctccctctgtctctccagctccctctgtctctccttctccctctccagctccctctgtctctccttctccctctccagctccctctgtctctccacttccctctgtctctccagctccctctccagctccttctgtctctcattctccctctccagctccctctgtctctcattctccctctccagctccctctgtctctccagctccctNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146734 lncRNA upstream 99772 14244708 ~ 14245318 (+) True G117131
TU146733 lncRNA upstream 100887 14242864 ~ 14244203 (+) True G117130
TU146732 lncRNA upstream 102373 14242117 ~ 14242717 (+) False AMCG00018551
TU146591 lncRNA upstream 322284 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 497998 13846890 ~ 13847092 (+) True G116976
TU146746 lncRNA downstream 61390 14409131 ~ 14412255 (+) False AMCG00018567
TU146814 lncRNA downstream 90251 14437992 ~ 14439091 (+) True G117197
TU146834 lncRNA downstream 186222 14533963 ~ 14534200 (+) True G117209
TU147042 lncRNA downstream 388355 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 426374 14774115 ~ 14775240 (+) False G117379
AMCG00018551 mRNA upstream 102825 14239242 ~ 14242265 (+) True AMCG00018551
AMCG00018550 mRNA upstream 107141 14232722 ~ 14237949 (+) True AMCG00018550
AMCG00018552 mRNA upstream 112776 14230990 ~ 14232314 (+) True AMCG00018552
AMCG00018549 mRNA upstream 144746 14192138 ~ 14200344 (+) True AMCG00018549
AMCG00018553 mRNA upstream 154023 14189942 ~ 14191067 (+) False AMCG00018553
AMCG00018558 mRNA downstream 13295 14361036 ~ 14367961 (+) True AMCG00018558
AMCG00018568 mRNA downstream 41285 14389026 ~ 14389346 (+) True AMCG00018568
AMCG00018570 mRNA downstream 44568 14392309 ~ 14393844 (+) True AMCG00018570
AMCG00018564 mRNA downstream 47262 14395003 ~ 14399115 (+) False AMCG00018564
AMCG00018569 mRNA downstream 56665 14404406 ~ 14406978 (+) True AMCG00018569
TU146730 other upstream 103053 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 154013 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 199512 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 295937 14046259 ~ 14049153 (+) True G117033
TU146594 other upstream 322284 14019928 ~ 14022806 (+) False AMCG00018537
TU147075 other downstream 428048 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 438882 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 606823 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2720471 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3633469 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile