RNA id: TU146834



Basic Information


Item Value
RNA id TU146834
length 238
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G117209
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14533963 ~ 14534200 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTGATCATCTGTATGCAGTGGCTCATAGAGGTGGCACGGACGCAGACCAGCGGGTCAGACTTTATGTTCAGAGCCCAGTGCTCACACTTCATCTGCTCTGCAGCACTAATACAGCACCAACGCACTACACTGTCCTCCAGAGAGCTgcctgcaacacagacacattaatacacagacattaacacacacacacacacatactgacacagtTCCAGCACACCATATTGTCCTCCAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146814 lncRNA upstream 94872 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 121708 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 134424 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 288645 14244708 ~ 14245318 (+) True G117131
TU146733 lncRNA upstream 289760 14242864 ~ 14244203 (+) True G117130
TU147042 lncRNA downstream 201896 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 239915 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 239915 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 239915 14774115 ~ 14775240 (+) False G117379
TU147077 lncRNA downstream 239915 14774115 ~ 14777110 (+) True G117379
AMCG00018575 mRNA upstream 4526 14519852 ~ 14529437 (+) True AMCG00018575
AMCG00018576 mRNA upstream 14944 14511238 ~ 14519019 (+) True AMCG00018576
AMCG00018578 mRNA upstream 29904 14498599 ~ 14504059 (+) True AMCG00018578
AMCG00018579 mRNA upstream 38162 14479080 ~ 14495801 (+) True AMCG00018579
AMCG00018580 mRNA upstream 55630 14476918 ~ 14478333 (+) True AMCG00018580
AMCG00018583 mRNA downstream 8130 14542330 ~ 14547480 (+) True AMCG00018583
AMCG00018582 mRNA downstream 17894 14552094 ~ 14554070 (+) True AMCG00018582
AMCG00018581 mRNA downstream 19889 14554089 ~ 14557800 (+) True AMCG00018581
AMCG00018577 mRNA downstream 40060 14574260 ~ 14588028 (+) True AMCG00018577
AMCG00018585 mRNA downstream 65062 14599262 ~ 14614445 (+) True AMCG00018585
TU146792 other upstream 186222 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 291926 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 342886 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 388385 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 484810 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 241589 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 252423 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 420364 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2534012 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3447010 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile