RNA id: TU146918


Basic Information

Item Value
RNA id TU146918
length 2880
RNA type TUCP
GC content 0.49
exon number 2
gene id G117267
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14503403 ~ 14520875 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttaaacagTACACCTGGAGAAGCCTTTATTTCAGCCCAGCCAACCCAACACCATTCCCATCACTGCTTtgattggttgtttttgttagattttgtttttataacccTAATTTTGGCATTCAGACCCAAGTTCACTTCTCATCAGGTCTAACAGAGTCTGGTCAAAGAAACTCTGCAAGCAACCAACTGATCAGCAaatttcttcaaataaataaatcaataaatacaaataaaagataacagtagaaatcacttaaaatgttcAGTTAAACAATAAGATTTATATCTCAGACGCGTCTCACAAGCGCCTCAGCAAAGGCAACGGGTGTGTCAAACAGATGCCTGTGACACCGAAAATTCACATCACGTACACatggcaacaaaataaaacagtaaaagaaTTGTCTGGTTAATGTTACAGCGTTACAGTCAGTCTGTAAACAGACACAAGGTTCTGCTCTCAGTACAGTCACATTCCTGATTCCACAGGCTTGATAACCAGGTTTAATTACAAAACCCTTTGATTAGAATCATTATTTTCGTTTGCAATGCAAAGCATTAAACCAGCTTTTCCTCTTGCAGCCTGATTCCTCACTTAATTCCCTTAATAACAGATGTGGAATATAGGAACACTGTTATTTTCATTagattaatattatcattatactgtcttgtttttttatttcattttgtattgatcaTCTAAACAATATGCTTCACTTGGAAACATGTCAGCTATTTCAGAACAGTTCATATGCAACTATgttaaggagaaaaaagaaaatatatatagaataaacAGCTTTAAATGCCAGTTCTTGACTTTCACTTGTTTTCTTCCATCTGCTTACCTATTTATGACGCATGCCGTCAGGACGTCAACTGTTTGACTGAGACTCTGTTCCCTTAACCTCTCTGTGAATGTAGCGCCAGAGCAAAGCACCACAGTGCCACCCCTCCTGCCCAGTCAACCCGCTTCTTCAGCCGGCCCGGGCTCTGGCTCCTCTGAGGGTCACAGTGGTGAcgtgtgtagctgtgtgtgtgtgtgtgtgtgtgtgtgtctgcaagTCTGTCTACATGTGAGTTTCTGTGTATATGGGTGTCTCTACATGTGTCATTTGTGCCATTATGCAACTGCCCTTGAGGAGGCGAGCCACAGAcgcaaacaacaacagcaaaacaatgcTGTAGCtgtgaaagcaaagaaacacacacaaaaacacacactcacacattcagACAGACACTCATATGACACAGGACTTGTACGGAGCTGGggggaagagaggaggagagacaggAGGCCTCATCCTCTTGGGAATCCATAAAGAGGTAAGCAGGAGCGtttcatgtattcattaatttattatttctgtactgattttaacatatatactccacagagaaactgaaaacagtcCCATCCATAGAAACCTCTCTGAGTGTGTACGTTGCCATGCCCTGTAGCGTTTATATACGAGTAGAAATATACACCGACTATccgtgtgtgtaaatgtgtgtatacgTATACATACAGGCATGTGAAAAGCTCGAGGCCCGTTTTAAAAATGCCAACACACACCCATCACTTGCAATGAAGACAATATTATTACTTGAGATAAATGTTTGTACTCAGACCAGTGGACAGCAGTTGAACCAGCTCAGGGGACAGTAGATATAGTCAGTGACAGGCTGAGTAGCatggagacagagggaggggaaggggaggagTGATGGGGGGACAGGGAGGATATGGATCGGGGGaacagaaggagaggaggagaagggacGGGGGCATTGTGTGAACGTAGGGGGGGTACAGATCTCTCATCGCGGGATTTTTTGAAGAAGCAATCTGGGAACAGAGGGTGTAGTTTATTGATTAGATGGGGAGGGGACAGGACACAGAGGACAGGGGAGGATTGTCAGACAAGGGCTGGAGGAGAGGGGAAGgatggagaaggagaaggaagaggtgGAGGGGAAAGGGAAAAAGACAAAGAGGAGACGGGACAGTTAAGGATGGGGCGAGGGGGTCGGGGGatagaagcagcagcagccagcATTATTGGCGGgcgggggatgggggggtgggtggtGTAGCAGCAGGAGTTGGGTACAGCAGGGGCAGGGGGAGGATCCTTCGCTCGCTCGTGCGCTTGCTGCTCTttccccacctcctcctcctccgcctcctccctccctcttccctctcctcagtTGTTGGCCTCGCCCGCCTCCTCATCCTGCTGGTCGCTGGTCCACAGGGTCAGATTATCTCGCAGCAGCTGCATGATGAGGGTGGAGTCCTTGTAGGAGTCCTCGTTCAGAGTGTCCAGCTCGGCGATGGCGTCGTCGAACGCTTGCTTGGCCAGGTGGCAGGCCTGCTCAGGCGCGTTCTGGATCTCGTAGTAGAAGACGGAGAAGTTGAGGGCCAGGCCCAGGCGGATGGGGTGGGTGGGCTGCATGTGCTCCTTGCTGATCTCGAAGGCCTCCTTGTAGGAGCCCTCGGAAGACTCCACCACAGCCGCCCGCTTCTCCCCCGTGGCCACCTCCGCCAGGTACCGGTAGTAATCGCCCTTCATCTTCAGGTAGAACACCTTGCTTTCGAACTGCGAGTCGTTGCAGTTCTTGATGAGGAACTTGTCCAGCAGGGAGAGGACGTCGCTGCACACCGTCTCCAGCTCTTTCTCGATCTTCTCCCGGTACGCGCGCACCATCTCCAGCTTCTTCTCGTTGCCGTCCGCCGAGGTCTTCTGCTCGATGCTGCTGATGACGCGCCAGGACGAGCGCCGCGCCCCCACCACGTTCTTGTAGGCCACCGACAGCAGGTTGCGGTCCTCGTTGGACAGCGGCTCATTCAACTCCGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146902 lncRNA downstream 24466 14478095 ~ 14478937 (-) True G117254
TU146901 lncRNA downstream 26184 14476990 ~ 14477219 (-) True G117253
TU146892 lncRNA downstream 44110 14417365 ~ 14459293 (-) True G117245
TU146864 lncRNA downstream 94454 14322085 ~ 14408949 (-) True G117223
TU146870 lncRNA downstream 101057 14357435 ~ 14402346 (-) True G117227
TU146962 lncRNA upstream 57361 14578236 ~ 14588050 (-) False G117293
TU146961 lncRNA upstream 64305 14585180 ~ 14588050 (-) True G117293
TU146993 lncRNA upstream 114529 14635404 ~ 14636339 (-) True G117319
TU147023 lncRNA upstream 182765 14703640 ~ 14704458 (-) True G117338
TU147142 lncRNA upstream 259412 14780287 ~ 14784313 (-) True G117432
AMCG00018571 mRNA downstream 42725 14450935 ~ 14460678 (-) True AMCG00018571
AMCG00018574 mRNA downstream 59503 14438004 ~ 14443900 (-) True AMCG00018574
AMCG00018573 mRNA downstream 65623 14433946 ~ 14437780 (-) True AMCG00018573
AMCG00018572 mRNA downstream 86149 14410503 ~ 14417254 (-) True AMCG00018572
AMCG00018562 mRNA downstream 133130 14369084 ~ 14370273 (-) True AMCG00018562
AMCG00018584 mRNA upstream 9127 14530002 ~ 14539282 (-) True AMCG00018584
AMCG00018587 mRNA upstream 70398 14591273 ~ 14596238 (-) True AMCG00018587
AMCG00018592 mRNA upstream 126217 14647092 ~ 14648105 (-) True AMCG00018592
AMCG00018591 mRNA upstream 127268 14648143 ~ 14702246 (-) True AMCG00018591
AMCG00018589 mRNA upstream 217519 14738394 ~ 14749164 (-) True AMCG00018589
TU146385 other downstream 1247634 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 2592067 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 3300515 11199578 ~ 11202888 (-) True G116428
TU145777 other downstream 3435085 11061655 ~ 11068318 (-) False AMCG00018437
TU145708 other downstream 3931401 10565795 ~ 10572002 (-) False AMCG00018431
TU147067 other upstream 215263 14736138 ~ 14738312 (-) True G117377
TU147284 other upstream 977787 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 977787 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 2488023 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 2705215 17226090 ~ 17256271 (-) True G117823

Expression Profile