RNA id: TU147042



Basic Information


Item Value
RNA id TU147042
length 2232
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G117353
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14736096 ~ 14738327 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gGGAAAATGAGTAATACATCTTAGATCTCCAGTGTACAGCGAACCACAGTTTAAAGAGAAAACAGGTTCaatctttttattatatatatatatatatatatatatatacacatacatacacatgcatacatatatatatgtatatattttacacacaaaaatattttttaaaactttgcAGTTTCCCCATTGAGTTGTTTTCTCATTCTTGTTTTGCTCTGTAATTCTGTGCCTTTTTGGCATAAGGTCCAATACTGAATATTTACAAGTGATTCCAGACCCTCTACAGACCAGCACATACTGACACGTAAACCATCCCGTTCCACCGCTCTGACCACCAGAACCTCGCTTCCACGtcactgtctctccctctcgTCTCTGCTGGAGTGCCAGCACCGTGACGCAGTCCCCCCCCCAATAAGGCCTGGCCTGCTCAGACATTTCATCccagatttgtattttctgtgtttcaaGTTCCACGTAGGTTCAAAGCCCTGAATCACTGGAGGTGGGGGACGAGCCTGGGGTGGGAATTTCTGTTTTCTGGGTTTTTGGTCCCACAGGTTTAAACCCCAGGAGGATATCGATAACGCTGGCCTTTTAACCGCAGTGCTTTCTGTTGGTGGGGGCAATACAGGCTGATGCACAGACAAGGGCACCAGAGGGAAGGGGGTGAGGGTGAGCAAGATGTGAAAGCTTTGCCAGGAGCCCCCCGCTTCCCCCTGGCCAGCCCTTGCTGGGAACCCTGGAGTCATCCTGCGCCCGGGCGGTGATGCATTTTCTGTCAGGGGGAATAGGAAGGGTCGTCCCACTTGTTGCCCGTGTCGTTGCACTGGAGCGCGGAGTCTGCAGGGGAAGTTGTAGGGGGGGTGGCGTAGACTTATGTCATCGTCCCCATCCCCCCCCGGAGGGTCAGGCAGAAGGGGGGTGTGGGGTAGGTGGGGCTTTCAGACCCAGTGAATCACCGTGCAAAATCCTCTTCCACCCCCCCCCCGGCCCACAACCTCCACAAACAAATGCTCAGGAGCAAGACAGAAAACACCAATCAGCACAGAGCGGGGCCGGGGGGCAGCGCCAATCAGCTGGAGTGtgaaaaaatctctctctctatttatgttttgtattaaacggtttgtgtgtgcgtgggggggggtgtgtgtatcatcatttgtaaaaaacaaaaacaaaaaaaaaaaaactaattaataataacaatagaaTTACCAAAACCAATATGGTCACTTTACTCCCATAGCCACAGAGTACACCAATAGTCTGCTCCTACTCTGCACCCCCCTGCCTTTGCCACTCTGTGCCTTCTCGCCAGGCGAAACACAggccacccccccacaccacagGCCTCTCCCGGATCCTGACAGAGCTGCCAATCGGAGTCAAAGAAACAACGGAGCTCCCTCTCCCTGCTGTTAGACGCAACACACCAGGCTCCCCTCCCTGCGGAGAGCTGCACCGCTGATGGAGATTGCTCCATGTAGGGAGGGGAGATGTAAGCCTAATCAGCCAGTCAGCCTCTCTGGGGAACAAGCAAGGCTCTCCCTTATGGCTCAGATCCCACAGTCATGCTGGAGAGGGAGTGCGGGCGGCTGCGTCCGGGCAGGGTGCAATAGGCAGTCAATGAAAGCACAGCACAGTAATTAACGCAGtgtactgtgtctctccaggccCAGAGCTGCAGACCTTGCTGTACTGTAGATGTCCAGGACATGGAGCTGGAGATCCATTCTTTAACAAGTTAAAAGTGAATAATTGTAGCCAATTAATGACACAAAGGCACTATAATAAACACCAGAGGTCAGAGGGTCACATGGAGCTTACACAGGCTAAAGTTACTAAACTAAACTGTTGTCTTATTCCTGTTTTCCTTGAAATGAAAGTGTTGGGaaggggggggagagggagaggtgccAGGAAGTAATTTCCTTTTCACTAGGCttgggtcaggggtcaggggtcagggagAGGAGGTTGTGAGGCAAAGGGAAGACGTTTTTTCCTAACAATATATTAGTCCACAGATATTTTCATTAAGAAcatcaatgtaattttttattattatttatttcttatatatatttatatataaaaagaatacTCTAAAAAGTTCATGATTTGTTGGAGTTGGACTACAGCAAAGGAGCAGAGACAGGTCTGAAGGTTGTGAACAGCGTGTGTGAAATGTACACAGAGCACAGGCCCCTCCCCTCCACTCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146834 lncRNA upstream 201896 14533963 ~ 14534200 (+) True G117209
TU146814 lncRNA upstream 297005 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 323841 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 336557 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 490778 14244708 ~ 14245318 (+) True G117131
TU147070 lncRNA downstream 35788 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 35788 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 35788 14774115 ~ 14775240 (+) False G117379
TU147077 lncRNA downstream 35788 14774115 ~ 14777110 (+) True G117379
TU147082 lncRNA downstream 45179 14783506 ~ 14784333 (+) True G117381
AMCG00018588 mRNA upstream 4432 14707571 ~ 14731664 (+) True AMCG00018588
AMCG00018586 mRNA upstream 89264 14630062 ~ 14646832 (+) True AMCG00018586
AMCG00018585 mRNA upstream 121651 14599262 ~ 14614445 (+) True AMCG00018585
AMCG00018577 mRNA upstream 148068 14574260 ~ 14588028 (+) True AMCG00018577
AMCG00018581 mRNA upstream 178296 14554089 ~ 14557800 (+) True AMCG00018581
AMCG00018593 mRNA downstream 83664 14821991 ~ 14824758 (+) True AMCG00018593
AMCG00018600 mRNA downstream 93173 14831500 ~ 14834064 (+) True AMCG00018600
AMCG00018608 mRNA downstream 188835 14927162 ~ 14927524 (+) True AMCG00018608
AMCG00018603 mRNA downstream 211309 14949636 ~ 14954263 (+) True AMCG00018603
AMCG00018602 mRNA downstream 216347 14954674 ~ 14981705 (+) True AMCG00018602
TU146792 other upstream 388355 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 494059 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 545019 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 590518 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 686943 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 37462 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 48296 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 216237 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2329885 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3242883 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile