RNA id: TU147067


Basic Information

Item Value
RNA id TU147067
length 2175
RNA type TUCP
GC content 0.48
exon number 1
gene id G117377
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14736138 ~ 14738312 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCCTGTGCTCTGTGTACATTTCACACACGCTGTTCACAACCTTCAGACCTGTCTCTGCTCCTTTGCTGTAGTCCAACTCCAACAAATCATGAACTTTTTAGAgtattctttttatatataaatatatataagaaataaataataataaaaaattacattgatgTTCTTAATGAAAATATCTGTGGACTAATATATTGTTAGGAAAAAACGTCTTCCCTTTGCCTCACAACCTCCTctccctgacccctgacccctgacccaaGCCTAGTGAAAAGGAAATTACTTCCTggcacctctccctctccccccccttCCCAACACTTTCATTTCAAGGAAAACAGGAATAAGACAACAGTTTAGTTTAGTAACTTTAGCCTGTGTAAGCTCCATGTGACCCTCTGACCTCTGGTGTTTATTATAGTGCCTTTGTGTCATTAATTGGCTACAATTATTCACTTTTAACTTGTTAAAGAATGGATCTCCAGCTCCATGTCCTGGACATCTACAGTACAGCAAGGTCTGCAGCTCTGggcctggagagacacagtacaCTGCGTTAATTACTGTGCTGTGCTTTCATTGACTGCCTATTGCACCCTGCCCGGACGCAGCCGCCCGCACTCCCTCTCCAGCATGACTGTGGGATCTGAGCCATAAGGGAGAGCCTTGCTTGTTCCCCAGAGAGGCTGACTGGCTGATTAGGCTTACATCTCCCCTCCCTACATGGAGCAATCTCCATCAGCGGTGCAGCTCTCCGCAGGGAGGGGAGCCTGGTGTGTTGCGTCTAACAGCAGGGAGAGGGAGCTCCGTTGTTTCTTTGACTCCGATTGGCAGCTCTGTCAGGATCCGGGAGAGGCctgtggtgtgggggggtggccTGTGTTTCGCCTGGCGAGAAGGCACAGAGTGGCAAAGGCAGGGGGGTGCAGAGTAGGAGCAGACTATTGGTGTACTCTGTGGCTATGGGAGTAAAGTGACCATATTGGTTTTGGTAAttctattgttattattaattagtttttttttttttgtttttgttttttacaaatgatgatacacacacccccccccacgcacacacaaaccgtttaatacaaaacataaatagagagagagattttttcaCACTCCAGCTGATTGGCGCTGCCCCCCGGCCCCGCTCTGTGCTGATTGGTGTTTTCTGTCTTGCTCCTGAGCATTTGTTTGTGGAGGTTGTGGGCCGGGGGGGGGGTGGAAGAGGATTTTGCACGGTGATTCACTGGGTCTGAAAGCCCCACCTACCCCACACCCCCCTTCTGCCTGACCCTCCGGGGGGGGATGGGGACGATGACATAAGTCTACGCCACCCCCCCTACAACTTCCCCTGCAGACTCCGCGCTCCAGTGCAACGACACGGGCAACAAGTGGGACGACCCTTCCTATTCCCCCTGACAGAAAATGCATCACCGCCCGGGCGCAGGATGACTCCAGGGTTCCCAGCAAGGGCTGGCCAGGGGGAAGCGGGGGGCTCCTGGCAAAGCTTTCACATCTTGCTCACCCTCACCCCCTTCCCTCTGGTGCCCTTGTCTGTGCATCAGCCTGTATTGCCCCCACCAACAGAAAGCACTGCGGTTAAAAGGCCAGCGTTATCGATATCCTCCTGGGGTTTAAACCTGTGGGACCAAAAACCCAGAAAACAGAAATTCCCACCCCAGGCTCGTCCCCCACCTCCAGTGATTCAGGGCTTTGAACCTACGTGGAACttgaaacacagaaaatacaaatctggGATGAAATGTCTGAGCAGGCCAGGCCTTATTGGGGGGGGGACTGCGTCACGGTGCTGGCACTCCAGCAGAGAcgagagggagagacagtgaCGTGGAAGCGAGGTTCTGGTGGTCAGAGCGGTGGAACGGGATGGTTTACGTGTCAGTATGTGCTGGTCTGTAGAGGGTCTGGAATCACTTGTAAATATTCAGTATTGGACCTTATGCCAAAAAGGCACAGAATTACAGAGCAAAACAAGAATGAGAAAACAACTCAATGGGGAAACTgcaaagttttaaaaaatatttttgtgtgtaaaatatatacatatatatatgtatgcatgtgtatgtatgtgtatatatatatatatatatatatatataataaaaagattGAACCTGTTTTCTCTTTAAACTGTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147023 lncRNA downstream 31680 14703640 ~ 14704458 (-) True G117338
TU146993 lncRNA downstream 99799 14635404 ~ 14636339 (-) True G117319
TU146962 lncRNA downstream 148088 14578236 ~ 14588050 (-) False G117293
TU146961 lncRNA downstream 148088 14585180 ~ 14588050 (-) True G117293
TU146902 lncRNA downstream 257201 14478095 ~ 14478937 (-) True G117254
TU147142 lncRNA upstream 41975 14780287 ~ 14784313 (-) True G117432
TU147148 lncRNA upstream 95544 14833856 ~ 14835725 (-) True G117438
TU147151 lncRNA upstream 118108 14856420 ~ 14857595 (-) True G117441
TU147187 lncRNA upstream 240729 14979041 ~ 14980384 (-) True G117472
TU147223 lncRNA upstream 475856 15214168 ~ 15214431 (-) True G117501
AMCG00018591 mRNA downstream 33892 14648143 ~ 14702246 (-) True AMCG00018591
AMCG00018592 mRNA downstream 88033 14647092 ~ 14648105 (-) True AMCG00018592
AMCG00018587 mRNA downstream 139900 14591273 ~ 14596238 (-) True AMCG00018587
AMCG00018584 mRNA downstream 196856 14530002 ~ 14539282 (-) True AMCG00018584
AMCG00018571 mRNA downstream 275460 14450935 ~ 14460678 (-) True AMCG00018571
AMCG00018589 mRNA upstream 82 14738394 ~ 14749164 (-) True AMCG00018589
AMCG00018590 mRNA upstream 11967 14750279 ~ 14770330 (-) True AMCG00018590
AMCG00018596 mRNA upstream 35662 14773974 ~ 14778855 (-) True AMCG00018596
AMCG00018598 mRNA upstream 46068 14784380 ~ 14797365 (-) True AMCG00018598
AMCG00018594 mRNA upstream 80471 14818783 ~ 14821860 (-) True AMCG00018594
TU146918 other downstream 215263 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 1480369 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 2824802 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 3533250 11199578 ~ 11202888 (-) True G116428
TU145777 other downstream 3667820 11061655 ~ 11068318 (-) False AMCG00018437
TU147284 other upstream 760350 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 760350 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 2270586 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 2487778 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 2487778 17226090 ~ 17256271 (-) False G117823

Expression Profile