RNA id: TU147148


Basic Information

Item Value
RNA id TU147148
length 1870
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G117438
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14833856 ~ 14835725 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAATGCATCCACATGATTATTAATACCGTGTTGGGACATGGACGGCTCCAGTATAACCCCAACATCTCCACGACTGCACAATTTGATGCAGCAGCAATTGCTGTTGTGGGGccaaaacatgaaaatacacCAAGCCCTTCTCAAAGCTACTTTTCAATTAAGTATGGTCAAGCCTAGCCATAAGATTGTgcaatgcagagagagagaggggaataaACTCCAAAAGCAGTATTTGATtgcaggtttattttaaaaagtacaaatgtgtaatatatatataaaataaaaacattggtCAAATTATGTCATTCATATTCTGAGGTAGGAGACTTAACTGGCAAGTCCCTTGAATCACCAGCTACCCAATGCAATACCATCTCAGTGTTAAAACAAACGCTACATCCAGACTCCCCAGAGAGCCATGCAGCAGGAGAGCGGAGCCACTCTCTCCCTTCAGACCATCCTGCAACCATGGCATCCATCCTCTGCTCCCCGCTGTCTGCAACAGGGTTGTTTTCTTCCTATTCAGGTGGCTGATTtgtgaaaggcgctatattAACAATTGACAGTTGGATTTTGGGAGCAGATGTGTGTCCAGAGAGATGCAGTTTCGAAGCTCAAGTAGAACGAACTGTCTATCTTTTTACATAAACAGTATGGACAAGCAGCCCATGCATCCTCCCAGGCTCCACTGCTGATATCAGCTCAAAGGCAGCAGTCTTGGAGACGAGCTTCTTTAAGAGGTACAGGGGGGACAAGCTGTTTTTGCAGTGGTTTGGACTGGATATTCAGGGGAAATGTGTGGGGGGTGGTGAGGAGAGGACCTGCCCCTGCCAGAGCAGAGATCACAGGACTGCAGCCAAGAGCTGAGGGTACAAAACCACCCCCATTGACTTCCGCTCccattttgatttgattgttttctttaaaattggCAGTTATTCATGATTTTCCCCACTTCCACGTTCCAATGTCACAAAGCTCCACACTGTGCCTGTCCTTCACCCCCCTTTCCTGTCCTCACCCTCACCATACCAATTAAGGTACTCACATAAGGTAGACTCACCAGGAAAaagataatatttatatataaaagattattattattatttttttaaatcaggagGATATATAAACCACATTTCTGGTTATTTGACTTGAGAAAAACCTGAGGGAACAGGGGCATTGGGATTTGGGGTGTGATTCCATCGCCTTTTATAAATTTCGTGTGCACTTCTCAGTTTTAATAAAcaactctttaaaaaaaataaaaaatagaggAATGTAGTTTAAGAATTGGCAGTTTTGTagttctcatttttttttttaaaggcacttTTCTACATTTGGAGAAACAGAATACTAAGATTAGTAGGACAAAAtatggaactatatacaggtCTCTCAACAATATACCAGTCACCAGTAAGAACGTCTTTGGTTTAAGTTTTTGGTCTTATTTCTGCTCTATTCAGTATTTGCGAGCCAGAACTGGTCGACCCGGTCCTGCAGATCCACATTGTCCCTGGGTTCTGTGCTGAGCAATTTGGCCATTCCAGTTAAAAGGTTAGGGGGCTCAGCTGGAACACAACACAAAATCTCCAAATCTCCGCTCTCCAAATacaagacaaaacacaaaagatcACTATTGTGTCCTGCTCTAAATGTCCTCATCCAAGTCCTTGTATACATCGTCCATGCTGTCACAGCTCTCCGTCTCACTGCCGCTGTTAACCTGATGCCCTCTCCGCTGGCTCAGGTGCTTCTCACAGTGCTTCAGGAAGACGCCCAGCATGCAGAAAGTGCGTCTGCAGACTAGGCAGTGAAACAGCCGCCTCCTGTCCACACAGCCTGCCCCAAAACCCCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147142 lncRNA downstream 49543 14780287 ~ 14784313 (-) True G117432
TU147023 lncRNA downstream 129398 14703640 ~ 14704458 (-) True G117338
TU146993 lncRNA downstream 197517 14635404 ~ 14636339 (-) True G117319
TU146962 lncRNA downstream 245806 14578236 ~ 14588050 (-) False G117293
TU146961 lncRNA downstream 245806 14585180 ~ 14588050 (-) True G117293
TU147151 lncRNA upstream 20695 14856420 ~ 14857595 (-) True G117441
TU147187 lncRNA upstream 143316 14979041 ~ 14980384 (-) True G117472
TU147223 lncRNA upstream 378443 15214168 ~ 15214431 (-) True G117501
TU147287 lncRNA upstream 662937 15498662 ~ 15516282 (-) False AMCG00018617
TU147288 lncRNA upstream 662937 15498662 ~ 15518181 (-) True AMCG00018617
AMCG00018595 mRNA downstream 3690 14824705 ~ 14830166 (-) True AMCG00018595
AMCG00018594 mRNA downstream 11996 14818783 ~ 14821860 (-) True AMCG00018594
AMCG00018598 mRNA downstream 36491 14784380 ~ 14797365 (-) True AMCG00018598
AMCG00018596 mRNA downstream 55001 14773974 ~ 14778855 (-) True AMCG00018596
AMCG00018590 mRNA downstream 63526 14750279 ~ 14770330 (-) True AMCG00018590
AMCG00018599 mRNA upstream 2845 14838570 ~ 14849909 (-) True AMCG00018599
AMCG00018597 mRNA upstream 24032 14859757 ~ 14871803 (-) True AMCG00018597
AMCG00018601 mRNA upstream 39026 14874751 ~ 14875404 (-) True AMCG00018601
AMCG00018607 mRNA upstream 44874 14880599 ~ 14885351 (-) True AMCG00018607
AMCG00018606 mRNA upstream 64087 14899812 ~ 14923007 (-) True AMCG00018606
TU147067 other downstream 95544 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 312981 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 1578087 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 2922520 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 3630968 11199578 ~ 11202888 (-) True G116428
TU147284 other upstream 662937 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 662937 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 2173173 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 2390365 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 2390365 17226090 ~ 17256271 (-) False G117823

Expression Profile