RNA id: TU147223


Basic Information

Item Value
RNA id TU147223
length 244
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G117501
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15214168 ~ 15214431 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aataaaactgggtgaggaacagccagactcagctaacagttcactgtcaaaagtcagacaccagggcaagactgagcacagcaacaagacacaaggcagttatactgcatcagcaaggtctctcccaggcagacatttcaaggcagacaggggtttccagatgtgctgtccaagctcttttgaagaagcacaaagaaacgggcaatgttgaggaccgtagacgcagtggtcggccaaggaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147187 lncRNA downstream 233784 14979041 ~ 14980384 (-) True G117472
TU147151 lncRNA downstream 356573 14856420 ~ 14857595 (-) True G117441
TU147148 lncRNA downstream 378443 14833856 ~ 14835725 (-) True G117438
TU147142 lncRNA downstream 429855 14780287 ~ 14784313 (-) True G117432
TU147023 lncRNA downstream 509710 14703640 ~ 14704458 (-) True G117338
TU147287 lncRNA upstream 284231 15498662 ~ 15516282 (-) False AMCG00018617
TU147288 lncRNA upstream 284231 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA upstream 302123 15516554 ~ 15518181 (-) False AMCG00018617
TU147400 lncRNA upstream 808167 16022598 ~ 16025073 (-) True G117646
TU147479 lncRNA upstream 1080399 16294830 ~ 16296445 (-) True G117710
AMCG00018609 mRNA downstream 36498 15171962 ~ 15177670 (-) True AMCG00018609
AMCG00018604 mRNA downstream 256282 14957253 ~ 14957886 (-) True AMCG00018604
AMCG00018605 mRNA downstream 265901 14939774 ~ 14948267 (-) True AMCG00018605
AMCG00018606 mRNA downstream 291161 14899812 ~ 14923007 (-) True AMCG00018606
AMCG00018607 mRNA downstream 328817 14880599 ~ 14885351 (-) True AMCG00018607
AMCG00018610 mRNA upstream 22729 15237160 ~ 15292085 (-) True AMCG00018610
AMCG00018613 mRNA upstream 165312 15379743 ~ 15418462 (-) True AMCG00018613
AMCG00018612 mRNA upstream 207484 15421915 ~ 15428751 (-) True AMCG00018612
AMCG00018617 mRNA upstream 290020 15504451 ~ 15518315 (-) False AMCG00018617
AMCG00018614 mRNA upstream 311859 15526290 ~ 15535846 (-) True AMCG00018614
TU147067 other downstream 475856 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 693293 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 1958399 13253085 ~ 13255769 (-) False AMCG00018522
TU146006 other downstream 3302832 11911014 ~ 11911336 (-) True G116577
TU145811 other downstream 4011280 11199578 ~ 11202888 (-) True G116428
TU147284 other upstream 284231 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other upstream 284231 15498662 ~ 15516282 (-) False AMCG00018617
TU147593 other upstream 1794467 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 2011659 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 2011659 17226090 ~ 17256271 (-) False G117823

Expression Profile