RNA id: TU147252


Basic Information

Item Value
RNA id TU147252
length 1849
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G117521
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15492246 ~ 15529341 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacaactgtgcTAGTGGTTCAGTCGTTTGCTTTCAGCTTTGCCAAGTCtggaaggggaaaaataaaacggCACCCAACAACTGTTTGATTGCATCTGACAGGGTAATGCAGTGAAGGAGATGGGCTCAGCCAAACTTCATAACATCAACCAGCAGAGGTTGCGGCAGTGATGAGGGGCTGTCGCTCTTGGTGCCCATTTTGCCAAACGCCTCCACGCTCACTCTAGGTTTAAGGTATCCACGATGACCGACTGATGGATGGGGTTTAGGCGAAACAGACAAGCAAGAAAGTGCTACAGCTTCGGAACTAGACCTCTCGCCCAAGGGGATACCCAGGTCTGAGAGTGACCTATTAAGGTTCCACTTTCCCATTGACCCCCCACCTCCTAAGTGGTGTGAAAACATGAACAGCCATAAGGATAGCAGCATTCAGACTTccttaatttttatttgaatgaatgcTAAGTATCTAAGGTAACataatgcatgttttcacaAGATTTCGCCGAccagtacaaataaaaaaaggccgTTTGACTGAGCACGTGCCCCTGCAAATAAAGGTTTGGAGAATCAGGCTTTGCAATGACCAGAGCGCGAGAGGAGTACACACTGGACTGTCAGCAAAGCATTTCAGTGGTCTGGGAGGTGGGTACTTCTTAACATGTGACTTTCTACACGTCATTATGGCCCCTTGCTGAATGGGAACGAGGCAGAAAACATGCAAATGACAACTCCCTGTGTTAGACCACGGACAGTTTATCATGGGAAGTGATATGCTGTGCAAAacacacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagattagAGAATGGCACTTCGATAATGCACTGCTTAAAAAGACGAGTgcttttaagttgttttttggAAAGATGGTTTGGGAGCTTGCTTTAAAATTTAGATTATGTCTACAGCAAATCAGATTATTAATGTGAATTAAATCAATCTAATCCCTCCTGCATTTTAATGCACAACCCCATCTACTATATCTATAGGAAAGTGGGAGAATGATTCTTCACTATGCTCTTTATTCCAGACTCTTATCTGCTGCCCCTCaaatcaaaatcatttaaatagaaATCTAGATCATGAAGGCGCATCAATTTTAATCCCAGGTTTGATCTAGATATGTAATGGGTGATTCTCCAAGAAGAAAATCCAAAGTGCTAATGACTCTAATGATAAAATGACAGGGACCAATTCCAGCCCCCCGATACTGAATTTGCAGTGAAGTCAGGGCCACACCATCAACTCTCAACACCTCATGCAGGCTTTCAGTGTTTGCACTTCCCCATCAAACCATGGTCACGCAAAGGAATTTGATTTTAAGTCAAAATACACagagaagaaaggaaataatataatgaagTGACGAGGATGGTGGGCAGAGTCCATTCTGGTTTGAGGACAAATGCTGGGGTTTTGTCGGAGTTGGGGGAGTCTGGATGGGCAAGCCAAGACAAAACCATAGCACATCATCGAGGAAAAGCTGGCCAGAGGAACGACGGCATCGTAGCAAGATCAGTCCAGGAGAGCCCTGTggcgggtggggggggaagaagaatttatttttactagAGCATTTAAAtagtgggaaaaaaacaaacaccaagaGTTTGGAATAGAAGAGCACAACTGTGGTTAAAACAGAAGAGACATCAGTCCATATgaaaaaatctttcaaatggTAGAATCCAAAAATGGAGGAAGAGCTTGCTTTGAGTTCTTTTCATGGGATGTTCTTGCTTCATTGTGCAGACAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147080 lncRNA upstream 592328 14855079 ~ 14899918 (+) True G117380
TU147090 lncRNA upstream 695096 14796531 ~ 14797150 (+) True G117389
TU147089 lncRNA upstream 698007 14793885 ~ 14794239 (+) True G117388
TU147088 lncRNA upstream 698442 14792796 ~ 14793804 (+) True G117387
TU147083 lncRNA upstream 705759 14786025 ~ 14786487 (+) True G117382
TU147297 lncRNA downstream 98027 15627339 ~ 15627719 (+) True G117557
TU147318 lncRNA downstream 163901 15693213 ~ 15695253 (+) True G117574
TU147317 lncRNA downstream 166114 15695426 ~ 15698865 (+) True G117573
TU147415 lncRNA downstream 554041 16083353 ~ 16121445 (+) True G117660
TU147567 lncRNA downstream 1219557 16748869 ~ 16749971 (+) True G117768
AMCG00018611 mRNA upstream 23864 15430284 ~ 15468382 (+) True AMCG00018611
AMCG00018602 mRNA upstream 510541 14954674 ~ 14981705 (+) True AMCG00018602
AMCG00018603 mRNA upstream 537983 14949636 ~ 14954263 (+) True AMCG00018603
AMCG00018608 mRNA upstream 564722 14927162 ~ 14927524 (+) True AMCG00018608
AMCG00018600 mRNA upstream 658182 14831500 ~ 14834064 (+) True AMCG00018600
AMCG00018619 mRNA downstream 54281 15583593 ~ 15585087 (+) True AMCG00018619
AMCG00018618 mRNA downstream 108662 15637974 ~ 15648175 (+) True AMCG00018618
AMCG00018620 mRNA downstream 139503 15668815 ~ 15669669 (+) True AMCG00018620
AMCG00018624 mRNA downstream 153143 15682455 ~ 15691741 (+) True AMCG00018624
AMCG00018623 mRNA downstream 242997 15772309 ~ 15777303 (+) True AMCG00018623
TU147178 other upstream 535666 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 704113 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 715752 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 1144505 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 1250209 14239498 ~ 14242037 (+) False AMCG00018551
TU147595 other downstream 1538900 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 2451898 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 2451898 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 3189894 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 3919314 19448626 ~ 19450628 (+) False AMCG00018740

Expression Profile