RNA id: TU147317


Basic Information

Item Value
RNA id TU147317
length 3357
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G117573
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15695426 ~ 15698865 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaagctcataCCCAAATTcacaaactattttttaaaccaaagcACATTTGAATGATTATGGAACCTTGTGTGGCTCAAAAAGATACGTATGTATTTATCTCAGTTTACATAAACTTTTACAGTTTCAGACCTCAGCAGAAGTGAGACCAGTCAAGAGTTTTGTTGCTTTTCCCTAAGTTGCTGCCAAAGCCAAGGCATTCATTTTGACATGCTTTTGTGACCCTGAGAAAAGGCCGGTGCCTGTTTTAAATAATGGGGGTAGGGTCTTAGCAAGGGCCCCCTCCAGCTGGCTGTGCCGTCTTTGTAGATGCCTGCTCTTTTGTGGCTCAGTGTTGCCTGGCTTGAACGAGCTAATAGGAGGGTGACGGTTGGCCAGGGGCTGGGTTGAGTTTTAAAAAAGGGGTCTTgtcttatctttttttttttttttttaaggattgcccaaaacatttaaaatagttatatgAATGTGTTGGGGTTTCATAAATGATATAGATACACAGAagctttatatttacatttgtatctaTGATTTTGGGAGATCTTTTTAAGGCAAATACGGTACCGAAGATGGGTCTGCTTTGGAAgatcttttccttttgttttcccctcagCTGTGACAGTAACCTGGAGTTTGAATGTTATTCTGTtggttatttttacatacaaattatttgttCTCCAGTTTCCTAAACTGTGttgcctgtttatttttattttttttattttttggagaaAAGCAAATCTGTATTCTGACTGGCCTCACTTTATACAAAGATGGTGCAAACACTTATTGacagtgttcttttttttaatcaaatgtctATTATTGTCagtaatgaatgtatttatttttcagatccTGTATTCTTTTGCTAAGGATTCAcgcaatgtgaaataaagagtGCACAGggtccttttctttttattaattttttttaaccttttttttttttttttttacaggatttcaagctaagagaaaacaaaaatgagacTCAAAACATAGCCATAAACCATAACCTGTGAAGTTAGTACAAGGAATGgaccttttttgtattttgtttttattttttcccaaagaAGATAAATGACATTCTTTGTACAATTGAAATATACTCTGTTATCTCTGCTAAAATGTACAAACAACCTAGGCTTCACTCTGTACTGCCGATCATGTGTGTAAGTGCTCATTTCTTGTTGGCACTAAAAGTAAACCCTATTGGCAAAGTTGTCATTTAAGCACTGCCAGTATCTTTCCACCACCTGAGGAATAACTGTAAAATGATGTACAGATTCTGAACTTAGGTTGTTCTATTTGTTTTCTAGATCCAAAGCATGGGTGTTGCTAAGGCATAGATGTGCAAGgctatttgttattttttgcaaagaacagacaaaaaaaaaagacattcagcTGATCTTGATGCATATTTTCCTCTGGAAGCCAAAGctctttgaaacaaacaaactaactaaataacaaaaaaaaacacactctaACCTCAAAGACCtcctatttttttaaattattttttttaatcttctccTCTTTCTTGATTTATCTTCTTGTACAGATGTGGATTTAAATAGCTTtatgaaatgcacttttttatgtttgaaaaaCTTCTAACGAGTCCCTGAGTCACCCATACCTGTCCTCATTTAATTAGTTTGTGTCATTACCTCATTTTAgtgttataaatgtgtatatttctgtttcattatTCAGTGTTGCAAAGCTTTAAACGACATAGAGGAGATAGCAGGGACTCGAAAGAGCTTTAGTTTTCACTTTCCTACGAAAGCTAATCCAcattaacttaaatatatatatatattatatatatagttctgtCTCTTAGACCTCATAGGACACGCAAACATCACTTTTTACTAATTTCGTTAGCTTTTATTAACGGTTTTGTTCCTGTCATTTCTTTATCCCCTGGCTTTTTGCAAACAGCCGTTCGATCCCTCCTTAGGTCCATAGATGCCCTAAATTACCAATACATATGTAGCCCTTaatgctttttagtttttctcttgtCAAATTAAACCAAAGTCAGCTATAACATCCAATGCAAACAGTGTATGTGTTCTGTTTGACTTAGAGTTACCAAACTGATAAGATGCAGTCATGTCAGGTGCCTTCTGACATCATCTTCTCAAGCTTTACTTCATCACTCTTCCACTAAACGTTTGCAGATATTTCCTCCCCCCAGTGTAATTGTGAGCTCTAGCCCATTATCCTTACTAAACCTATATGCTTCTACCACTAATGCAGCAGTATTCTCTGTAAATAGTTGGGCATGGTACATTCTTTTGTGCAAGTGTCATTTTAAAGTACctcaaaccaaaccaaaccaaaccataTACCATGTTTACAACTGCTCACGCAATCTTGATAGGCCGCTGAGAATGAAAACCTAAAGGACTGGTTTCACAGGCACAGATTAGCACTATTCAATGTTATGTTATGATAGTTAGGGTGGTCAAATACTaatgctaatcaaggtctgtgaaatcaGCTGTAAGAGTTTAGCTTCAGTCTCCAGATACCGTCTGACTAAgattgctttgtgtgtgtatgtgtgtgtgtgtgtgttattacaACAGatagtgtaataaaaataatgatcaacAGCTCTATCCCCGTCTGTAATTGTGATTTAGCAATTTTTAACAAAAAGTGTAAATTTAAACGCACATTAATTAGAGCTGCTATTCTTTGTACAGAGGGAGAAGGAATGCGCCAGACTGAACCACGAGGAGggaaaagttattttgtttttatttttatttgccattctttttcggtcaacaaaaaataagtttctAAAAAGCGCAGTCCGGTAAAAGATTGGGGATGTAAATAATACATGGAGAATCTGCAGTTCAAAGGCACCGAATTCGAGGAGCAGGTTGTTTGACCATAAATAATTGAGAGAcaaagaattttttttttttactgaagcCTTGAGCCTGCCTTGCTATTGGCAACACCCAAGCTCTGCTCTGTTCCAACTCCTAAGAGAGCTTCTATTCAGGTCAGGGCTGCATATAGTTTGCAGCTCAAAACTCAACgtgtcataaaaatatataattcagtaTAAAACGTGTGCTGACCTCAGCATTCAAAATCTTGCAGTCTTAATGTACAGCAATGAGAAAAAGAAACTGTTATTTTATGATCTTTTCATTAAAAGCTTGATTGAAAACGAACATGTGCATCACCTTCTTCTTAGTGTCTGGACCTTGTCACTGatttgcagaaatgtgtgcTGTGATGGCCGGGCTCTGTGAGCGTGTCTGTTAACACTTGTGAATGTACGGATATGTCTGCAGAGCTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147318 lncRNA upstream 173 15693213 ~ 15695253 (+) True G117574
TU147297 lncRNA upstream 67707 15627339 ~ 15627719 (+) True G117557
TU147253 lncRNA upstream 166085 15525714 ~ 15529341 (+) False G117521
TU147252 lncRNA upstream 166114 15492246 ~ 15529312 (+) True G117521
TU147080 lncRNA upstream 795508 14855079 ~ 14899918 (+) True G117380
TU147415 lncRNA downstream 384488 16083353 ~ 16121445 (+) True G117660
TU147567 lncRNA downstream 1050004 16748869 ~ 16749971 (+) True G117768
TU147592 lncRNA downstream 1310033 17008898 ~ 17009246 (+) True G117783
TU147612 lncRNA downstream 1454917 17153782 ~ 17155824 (+) True G117801
TU147618 lncRNA downstream 1461897 17160762 ~ 17161040 (+) True G117804
AMCG00018624 mRNA upstream 3685 15682455 ~ 15691741 (+) True AMCG00018624
AMCG00018620 mRNA upstream 25757 15668815 ~ 15669669 (+) True AMCG00018620
AMCG00018618 mRNA upstream 47251 15637974 ~ 15648175 (+) True AMCG00018618
AMCG00018619 mRNA upstream 110339 15583593 ~ 15585087 (+) True AMCG00018619
AMCG00018611 mRNA upstream 227044 15430284 ~ 15468382 (+) True AMCG00018611
AMCG00018623 mRNA downstream 73444 15772309 ~ 15777303 (+) True AMCG00018623
AMCG00018625 mRNA downstream 87028 15785893 ~ 15790897 (+) True AMCG00018625
AMCG00018630 mRNA downstream 313422 16012287 ~ 16025098 (+) True AMCG00018630
AMCG00018635 mRNA downstream 557332 16256197 ~ 16278801 (+) True AMCG00018635
AMCG00018637 mRNA downstream 581968 16280833 ~ 16286663 (+) True AMCG00018637
TU147178 other upstream 738846 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 907293 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 918932 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 1347685 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 1453389 14239498 ~ 14242037 (+) False AMCG00018551
TU147595 other downstream 1369347 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 2282345 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 2282345 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 3020341 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 3749761 19448626 ~ 19450628 (+) False AMCG00018740

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU86951 True 2513 lncRNA 0.42 7 NC_053117.1 26761391 ~ 26829185 (+)