RNA id: TU147400


Basic Information

Item Value
RNA id TU147400
length 1644
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G117646
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16022598 ~ 16025073 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagtctgtgtctgtgctctcAAATGTCTAGTCTTGGAAAAAGAGTTTGCCAAATGTTGTGGTCAATGAGCAGTGAGTACATCCTGTAGGCAATGGAACTGAATAATAGTATATCACCAGGTGTGATCCTTGGCATAGAAACgaagatgtgaaaaaatatttaacctCAGGTGTCATGACATAGGCTTCAGATCAGACACAGCTCCTTTTCCTCACATTATTGTGCATGTAATATATGCTTTAACCCCTATTAAAAGAAGTTAAATCTATtgttaagacatttaaaaacataaccgATGGGATTGAATCCCTTACTTTCTTTCAATTCAAATGGCATGCTTTAAAGAGAAGATAAATAAAGATTTGTAAGggtttacagtaaaatatttaattatttttttacagttacagCACAGAAATCTTTGtatctattgtttttatttttttattttaagtaatcttTTGCAGGTCAGTGCCATGTGACGAGTGCTCCTCTGTATTACTCATGACGTTCCAAAGTGTCAAAACAATCTTGTCGGTTTTGCTCTCCGAAACAAATAGCGAAGACAACCAAGTTATCTTCAAAGAGCTGAGCTCACAGATCTCTCGTCAATCTAAAAGCTTGATGGGTTCAAAAGTATAACATATggcttgtttttaaagcaaaaaaaagtgcatccaacacaaaatgaaattcCAGTCTGTGGTTATCTATCATCCTTTTTCTCATCAGAGAGTCTTCTTGTGTTCTCTGTAAGCTCGTTCACAGCTCACACCACACCCATGGGTGCAGAAGTCTTGCTCAAGAGTGCTCTTGGTATCACAGTTCAAAGGAGCTGCTGGGCAGTCTTCAGGGGGAGCTTGTGTGATCCACCTGCATCCTCCTGTACTGGCCGTGAAGGACGCCCCGCTTCTTGTTAAACCACCCTTCCTTAATAAATATCGGAGGCTTCCAAGCAGATCCATTCACAGGAGTGTTATTCCCAGAAGTTATAACACTTTAATTTAGCAATGCACGCGAAAATAGTGTTTTGATTTCCTTGTCTCACGTTGCCGTGCACTTCAACCATTTCTGTGtacatatatagttttatatatatatacattacttaAAACAAAGCTGTTATCTAGGGCCGTAGTCGTAATTTGCAGGGGCTCCGGCAGCAGAGTACATGTTGGCAGCAGCGGGGTTCATATGGTGGTGGTAGCCGTGCCCCCGGATACTGGGCAGTGGGTAGGGAGACGGCCTGGTCTTGGCTCCCAGGTAGTGTTCGTAGGTGCTGGGGTACTTGTaggggtggtggtggagggTGTCGGGGGCTTGGGGGTGCCCATCAAGCCGCAGTTCGTGGGGGGGGCTGGGGCGTCCCGTGGTCAGGGGGACAGGGTGCAGCCCGCCTGGGACAGGGAGTGCCGGGCTCAGGACGCGTGACATCAGCTGGTGGGCGGGGTCGCCGTGGATGGGGGTGCTGCTGGGGTCGCGGTCATACTCTCGCCGGCTGTCTACTTCTGGATCAAACGGCACCACAGACTTTCTCGGTGCCGTTCTGCTGTGGGGGGGATGACATGGGGTTCCTGGTCCTGGCGAAGGCACTCATGATTGGCAGGGATCCTGGCCGGTGATTTCTCGGCCTAACATGGGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147288 lncRNA downstream 504417 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 504417 15516554 ~ 15518181 (-) False AMCG00018617
TU147287 lncRNA downstream 506316 15498662 ~ 15516282 (-) False AMCG00018617
TU147223 lncRNA downstream 808167 15214168 ~ 15214431 (-) True G117501
TU147187 lncRNA downstream 1042214 14979041 ~ 14980384 (-) True G117472
TU147479 lncRNA upstream 269757 16294830 ~ 16296445 (-) True G117710
TU147623 lncRNA upstream 1128929 17154002 ~ 17155261 (-) True G117809
TU147680 lncRNA upstream 1441061 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 1489784 17514857 ~ 17515120 (-) True G117856
TU147721 lncRNA upstream 1559678 17584751 ~ 17585098 (-) True G117888
AMCG00018628 mRNA downstream 127774 15863081 ~ 15894824 (-) True AMCG00018628
AMCG00018629 mRNA downstream 173647 15831182 ~ 15848951 (-) True AMCG00018629
AMCG00018627 mRNA downstream 197151 15795181 ~ 15825447 (-) True AMCG00018627
AMCG00018626 mRNA downstream 238052 15752336 ~ 15784546 (-) True AMCG00018626
AMCG00018622 mRNA downstream 365143 15648519 ~ 15657455 (-) True AMCG00018622
AMCG00018631 mRNA upstream 7627 16032700 ~ 16050889 (-) True AMCG00018631
AMCG00018634 mRNA upstream 35633 16060706 ~ 16081326 (-) True AMCG00018634
AMCG00018633 mRNA upstream 64912 16089985 ~ 16096022 (-) True AMCG00018633
AMCG00018632 mRNA upstream 90892 16115965 ~ 16143336 (-) True AMCG00018632
AMCG00018640 mRNA upstream 264761 16289834 ~ 16293685 (-) True AMCG00018640
TU147284 other downstream 504417 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 506316 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 1284286 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 1501723 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 2766829 13253085 ~ 13255769 (-) False AMCG00018522
TU147593 other upstream 983825 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 1201017 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 1201017 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 1578283 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 2441295 18466368 ~ 18474245 (-) True G118075

Expression Profile