RNA id: TU147415


Basic Information

Item Value
RNA id TU147415
length 1558
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G117660
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16083353 ~ 16121445 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acctgtatttttttctccttttattttaacaagctGAATACTTGCCGCAGGATATTAGTGAAATTAACATAATACATTCTGTCACTGTGGCATTACTTCTGATCCCTACGAAAGCATGAACAACTTACTCTTCTATGAAATCAAtccattgtaatgttttctgattattatcttttttttcaggtttataatacaatgtaatacaaGGCAAAAACCCACCACCAGTCTAGACTACACTGATAACGCTAAGAGAgatagagtgtgtgtgagagagagagagagagagagtgtgagggagagaaagagagagagttatattatataaaacacattgttaatttgttttcttttaatctacCATGAAAAGTTTAAGGCACATGATAGttacaaacacatttgctaCTAAGTAGTACAGTTACTTTATTTGAACGATTTTGATCAGTGATATATCTACATAGGTAGGTCTTGCTcatccttgtttttttgttttgtttctttttttatttccagctgCACCTCGCCAATGTTCCTTCACAGCAAGATTTATCAGTACAATTAAAGTAcagtttataatatatttagcaACAACCCCCCGgcccttatatatatattccatatacataggtatatatatatggaatacaATTTCAGGCCCTTTGGTAGTAAAGTATACTGCGAAATAGCAGCTAGGGATAGACAGAGATGGAAATCTGATGAAagcacacaatataaatatttcaatgtgggttattttctttttttcaaattaaagttaGTATTGTAATTCTAGTAATATACTTCTTTGTaaacatattgtaaaaatacaagCTTTAGAAAGTCACATCACATAGAAAATAATACTTCAAAGCAGGCACATGCCAGTCTCCTTGTAGAATCACAAACTGACCAGTCCTGGATTTCTGTGCTGCACGACTGACTGCCGCAGCCTCAAGCCCCCCACATTGCTTGCATTAGGTTGTATAGCTACAACCAAAAAAATGGAGTACCGCCATTCAACTCAATCTATATCTAAAGAGTATTTTGATTTTTCTTGGCCTGTATTTGAAAACAGGATCTTTCTCATGTTAACAATCTTTGAAACATACCCCACAacgcaaaaaaaaagaataaataaaagcgAGGAAGTTTGTTTCCAGCTTTGCAAACCTGCTAAAACTGCCTCTATCTTTTTCAGGCTGATTCCTAACGGCTTACAGCATTGTTTCCTATGAGAACTGGCAGTTAGAAGAACATATTATTTaacatcttacattttttttctttttttttcatgcttgcTTTAAAGACTTAAAAAGATGCATTAGTAAATCAGAGCACAGATACGTCAAATAGTCTTAAGCGAGTCAGCATAATGGCAGTGAGATGAGAGAATTCAATCATATCGGCATCTCTAGTCTGTCTATCCCTGCCGCAAATGCCTTGTCTAATAAACCGTTTGTCTTACTTTATCCTGTCCCCTCCGCCCCCACCCCAAAGATTTTGGCAACCAGGTTATcgattgaaaatgtatttgttttttgttttttttgtttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147317 lncRNA upstream 384488 15695426 ~ 15698865 (+) True G117573
TU147318 lncRNA upstream 388100 15693213 ~ 15695253 (+) True G117574
TU147297 lncRNA upstream 455634 15627339 ~ 15627719 (+) True G117557
TU147253 lncRNA upstream 554012 15525714 ~ 15529341 (+) False G117521
TU147252 lncRNA upstream 554041 15492246 ~ 15529312 (+) True G117521
TU147567 lncRNA downstream 627424 16748869 ~ 16749971 (+) True G117768
TU147592 lncRNA downstream 887453 17008898 ~ 17009246 (+) True G117783
TU147612 lncRNA downstream 1032337 17153782 ~ 17155824 (+) True G117801
TU147618 lncRNA downstream 1039317 17160762 ~ 17161040 (+) True G117804
TU147619 lncRNA downstream 1040069 17161514 ~ 17161723 (+) True G117805
AMCG00018630 mRNA upstream 58255 16012287 ~ 16025098 (+) True AMCG00018630
AMCG00018625 mRNA upstream 292456 15785893 ~ 15790897 (+) True AMCG00018625
AMCG00018623 mRNA upstream 306050 15772309 ~ 15777303 (+) True AMCG00018623
AMCG00018624 mRNA upstream 391612 15682455 ~ 15691741 (+) True AMCG00018624
AMCG00018620 mRNA upstream 413684 15668815 ~ 15669669 (+) True AMCG00018620
AMCG00018635 mRNA downstream 134752 16256197 ~ 16278801 (+) True AMCG00018635
AMCG00018637 mRNA downstream 159388 16280833 ~ 16286663 (+) True AMCG00018637
AMCG00018638 mRNA downstream 174593 16296038 ~ 16298711 (+) True AMCG00018638
AMCG00018636 mRNA downstream 252451 16373896 ~ 16378701 (+) True AMCG00018636
AMCG00018641 mRNA downstream 297594 16419039 ~ 16434303 (+) True AMCG00018641
TU147178 other upstream 1126773 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 1295220 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 1306859 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 1735612 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 1841316 14239498 ~ 14242037 (+) False AMCG00018551
TU147595 other downstream 946767 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 1859765 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 1859765 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 2597761 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 3327181 19448626 ~ 19450628 (+) False AMCG00018740

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU412516 False 1482 lncRNA 0.43 2 NC_047618.1 1982054 ~ 2021135 (-)