RNA id: TU147479


Basic Information

Item Value
RNA id TU147479
length 342
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G117710
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16294830 ~ 16296445 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cattttaaacaattccTCCTCATCTTCCTCTAATGTCTTAACCTCCTGCTCAGGGAGAGATACAATCGGTTCAAAGTGGGGGTCGTGGTTGGTGTCCTCTGTATTTTCTGTAGTGGGCTCAGGTTCTTCTGGTGTCCTTCGTATCTGCCATGTTGTGGGAGATGATGGTGGATTACAGGATGGTgttgtttgatttaaaagccgcccgtcctgctctctgtgtccctctcgcTTCCTGTTGCTCCTTTCGCGCTGAAATTTCCCTCTGCACATTGACCTCACTCCCAGCAGCCCCCGCGCCGCACTGGCCGCTAAATCACATCCCTTCTTTTCGCTTTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147400 lncRNA downstream 269757 16022598 ~ 16025073 (-) True G117646
TU147288 lncRNA downstream 776649 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 776649 15516554 ~ 15518181 (-) False AMCG00018617
TU147287 lncRNA downstream 778548 15498662 ~ 15516282 (-) False AMCG00018617
TU147223 lncRNA downstream 1080399 15214168 ~ 15214431 (-) True G117501
TU147623 lncRNA upstream 857557 17154002 ~ 17155261 (-) True G117809
TU147680 lncRNA upstream 1169689 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 1218412 17514857 ~ 17515120 (-) True G117856
TU147721 lncRNA upstream 1288306 17584751 ~ 17585098 (-) True G117888
TU147764 lncRNA upstream 1438231 17734676 ~ 17736324 (-) True G117916
AMCG00018640 mRNA downstream 1145 16289834 ~ 16293685 (-) True AMCG00018640
AMCG00018632 mRNA downstream 151494 16115965 ~ 16143336 (-) True AMCG00018632
AMCG00018633 mRNA downstream 198808 16089985 ~ 16096022 (-) True AMCG00018633
AMCG00018634 mRNA downstream 213504 16060706 ~ 16081326 (-) True AMCG00018634
AMCG00018631 mRNA downstream 243941 16032700 ~ 16050889 (-) True AMCG00018631
AMCG00018639 mRNA upstream 5469 16301914 ~ 16325216 (-) True AMCG00018639
AMCG00018642 mRNA upstream 82258 16378703 ~ 16391388 (-) True AMCG00018642
AMCG00018643 mRNA upstream 98511 16394956 ~ 16409595 (-) True AMCG00018643
AMCG00018644 mRNA upstream 142186 16438631 ~ 16462363 (-) True AMCG00018644
AMCG00018645 mRNA upstream 168296 16464741 ~ 16485588 (-) True AMCG00018645
TU147284 other downstream 776649 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 778548 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 1556518 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 1773955 14503403 ~ 14520875 (-) True G117267
TU146385 other downstream 3039061 13253085 ~ 13255769 (-) False AMCG00018522
TU147593 other upstream 712453 17008898 ~ 17009301 (-) True G117784
TU147639 other upstream 929645 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 929645 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 1306911 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 2169923 18466368 ~ 18474245 (-) True G118075

Expression Profile