RNA id: TU147622


Basic Information

Item Value
RNA id TU147622
length 598
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G117808
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17224012 ~ 17224609 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCACGATCTCGCCCTCCGCACTGATCGTGGCCCCCGCTCTGGAGAAGCGCCCCTGCAGCCCCGTGGTGTACGTCGTGTAATCTCCATTGGGACTGGACTCGAAGAGCACCACTTCCACAAAGGCAGTATCCTTGGCCAGGATCGGTCCCGGAGACGTGGTGGCCACCAGGAGCACCAGGACCACCGCATCTGCGAAATAAGCCCCCCCTCGCCGTGGTGAAATCATCTTGCCGGCTGGATCAGCGCCGATCGGAACATAATTTCcagtttttttggggggtaaaGCCCTGGGCTGCTTCTGCAAAGGAGACGTCGGGGAGAAAGTTGGAGCGCACAGGggagatctctctctctctctctctctcgctctctctctctttccctcttcttctgcttctgGATTGTGCAACGGGAACTCAATGCCGCAGACTGGACGTGTTTATTTCACCATTGCAGCCTTGTCAATTGcaaggctctctctctctctctctctctccagctctacAAAGCGGATCTCCTTTGATCTCCAAACACGtgatttttttagatttttttttctctctctctctctctctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147619 lncRNA upstream 62289 17161514 ~ 17161723 (+) True G117805
TU147618 lncRNA upstream 62972 17160762 ~ 17161040 (+) True G117804
TU147612 lncRNA upstream 68188 17153782 ~ 17155824 (+) True G117801
TU147592 lncRNA upstream 214766 17008898 ~ 17009246 (+) True G117783
TU147567 lncRNA upstream 474041 16748869 ~ 16749971 (+) True G117768
TU147627 lncRNA downstream 26260 17250869 ~ 17253023 (+) True G117813
TU147720 lncRNA downstream 360142 17584751 ~ 17585112 (+) True G117887
TU147816 lncRNA downstream 754402 17979011 ~ 17980939 (+) True G117959
TU147850 lncRNA downstream 756601 17981210 ~ 17983017 (+) True AMCG00018681
TU147877 lncRNA downstream 993194 18217803 ~ 18218099 (+) True G118005
AMCG00018647 mRNA upstream 74656 17141389 ~ 17149356 (+) True AMCG00018647
AMCG00018648 mRNA upstream 133990 17071354 ~ 17090022 (+) True AMCG00018648
AMCG00018641 mRNA upstream 789709 16419039 ~ 16434303 (+) True AMCG00018641
AMCG00018636 mRNA upstream 845311 16373896 ~ 16378701 (+) True AMCG00018636
AMCG00018638 mRNA upstream 925301 16296038 ~ 16298711 (+) True AMCG00018638
AMCG00018654 mRNA downstream 28546 17253155 ~ 17256857 (+) True AMCG00018654
AMCG00018655 mRNA downstream 66093 17290702 ~ 17296987 (+) True AMCG00018655
AMCG00018659 mRNA downstream 322351 17546960 ~ 17574431 (+) True AMCG00018659
AMCG00018662 mRNA downstream 353326 17577935 ~ 17584564 (+) True AMCG00018662
AMCG00018663 mRNA downstream 360911 17585520 ~ 17593696 (+) True AMCG00018663
TU147595 other upstream 154342 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 2267432 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 2435879 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 2447518 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 2876271 14345090 ~ 14347741 (+) True G117178
TU147848 other downstream 756601 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 756601 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 1494597 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 2224017 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 2746530 19971139 ~ 19974730 (+) True AMCG00018762

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058651 False 3196 mRNA 0.50 8 NC_007116.7 15992655 ~ 16126906 (+)
grasscarp (Ctenopharyngodon idella) CI01000071_03040871_03042232.mRNA True 995 mRNA 0.46 3 CI01000071 3040747 ~ 3042647 (-)