RNA id: TU147623


Basic Information

Item Value
RNA id TU147623
length 1260
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G117809
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17154002 ~ 17155261 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttagcttTGACAAACACAGGAAAGTGGTAATATGGAGAAATGCCAAAATTTAGCACCGTTTCCTTTAACCCAGAATTGTTGTGCCCTTTCACGTTGTAGTTCTTGTTGATATTCGTCTGGGTTTCAGGAAAACCAGTCTTACAGATGTGCTCTGCTTGAGTTAGGAAAACCAGGTGACACCAGGACATCAGGCTTTGCTCTTGGGAGCATCAGCCCTCCCGTACACTCAGGGCTACTGCTGCCTTAGTAGCAAACTAGCATTTAAtagtgtttgttgtttgtcGTCGATTCGTGTAGTTTGGTTTCAGCACTGTAGCTTTGTGATGAACAAAAGAGCTAATGAGTAACAAATAGAGCTACGTTATAACAATGGTATAACAGAGGTAACAAATAGTTATAGCAGTGGCGTAACAGGGAAATAATAGACTAATTTTGCAAGTCTAACTTTCATAGCACAGTTTGGGTGTGTCAGTCCGTTCTCTACAGTGTCTTTCTGACCTTTTGCGTAGCCTTTTTCTACTGGGCCCCCAGACCTTTTTAAAGTCTGTGTTGTATagtcattataatatatacaggtAGAGAAGCACAGCTTAATTCTGATTGTCAGAAAAAGGCCAAAGTCAAGTAGTCGAGAGAGATGGTTGAAAGACCGATGAATCCCCAAAGGCGGATTTCGAAAAAGTGTCTCCACTTTTTAACATTATAAACCTTTCAGATGTTGTCAGTGTATAtgccttttgtgtttgttttgcagacttTTTATACTGTTTCTATGAAATGTATCCATACTGCTAAAAGACTACCAGTTTTAAATGCCCTATTTATAACTCAGTGCTGTAATTAATGATTACTATAAGAATCTAATCTTGCCTTTTCTTAGAGATCTGTActacaaatataacatttttggGTACTTCAGGcactatttaatttttttttatttgtagcaCTTAAAAGGattgtataaaaatgtaatatttttaattttttaatgtaattattttctccGTCATTaccattttacaatgttttaaaaggcTAGAAAATCAATCtgtgtatatttctgtatatgtaTAGCAGCACATTTCATTTATGGAAATATGTtctctgaatatttatttactaatatatttatctttaagCCATGTCTTATGTTGAGAGTGTATGAACGTTattgaaatcattttttttgtttgtttgagaaaTCACTAACATGAGACTTTGTAAATACATGATAATTGCACACAAAGATTAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147479 lncRNA downstream 857557 16294830 ~ 16296445 (-) True G117710
TU147400 lncRNA downstream 1128929 16022598 ~ 16025073 (-) True G117646
TU147288 lncRNA downstream 1635821 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 1635821 15516554 ~ 15518181 (-) False AMCG00018617
TU147287 lncRNA downstream 1637720 15498662 ~ 15516282 (-) False AMCG00018617
TU147680 lncRNA upstream 310873 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 359596 17514857 ~ 17515120 (-) True G117856
TU147721 lncRNA upstream 429490 17584751 ~ 17585098 (-) True G117888
TU147764 lncRNA upstream 579415 17734676 ~ 17736324 (-) True G117916
TU147781 lncRNA upstream 605289 17760550 ~ 17761560 (-) True G117933
AMCG00018650 mRNA downstream 83312 17068212 ~ 17070690 (-) True AMCG00018650
AMCG00018649 mRNA downstream 176919 16963043 ~ 16977083 (-) True AMCG00018649
AMCG00018651 mRNA downstream 230408 16912767 ~ 16923594 (-) True AMCG00018651
AMCG00018646 mRNA downstream 406041 16747653 ~ 16747961 (-) True AMCG00018646
AMCG00018645 mRNA downstream 668414 16464741 ~ 16485588 (-) True AMCG00018645
AMCG00018652 mRNA upstream 959 17156220 ~ 17168116 (-) True AMCG00018652
AMCG00018653 mRNA upstream 23828 17179089 ~ 17224239 (-) True AMCG00018653
AMCG00018656 mRNA upstream 112328 17267589 ~ 17290539 (-) True AMCG00018656
AMCG00018658 mRNA upstream 143003 17298264 ~ 17304621 (-) True AMCG00018658
AMCG00018657 mRNA upstream 153882 17309143 ~ 17316875 (-) True AMCG00018657
TU147593 other downstream 144701 17008898 ~ 17009301 (-) True G117784
TU147284 other downstream 1635821 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 1637720 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 2415690 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 2633127 14503403 ~ 14520875 (-) True G117267
TU147639 other upstream 70829 17226090 ~ 17256271 (-) True G117823
TU147640 other upstream 70829 17226090 ~ 17256271 (-) False G117823
TU147734 other upstream 448095 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 1311107 18466368 ~ 18474245 (-) True G118075
TU148096 other upstream 1890421 19045682 ~ 19047577 (-) False AMCG00018723

Expression Profile