RNA id: TU147639


Basic Information

Item Value
RNA id TU147639
length 5359
RNA type TUCP
GC content 0.43
exon number 4
gene id G117823
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17226090 ~ 17256271 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCACAGAGACATCATTCATtgcacatgttttaattttgcagaactttAAATATACCGTAAAGAAAGCAACCCCTTAAATCAtgaaaattgaaacatttacatCGTAAATTAGGAGGAAAACAAAGGACATGTATGCACTTATACATGCTGGAATAAAGGTTTAAATTGATTACTCAATGgcgtggaaaaaaaaaaaaatagaaataaatagttattttttcttacaaaatgGTCTCGAGAAGGTCCCCCTTCCCCCACACAGGACAGGATTTACAGAATACTGGATATTAAAATCCCCAACATTTGGAATCTACCCACAACCACTAGCAAGTGCAGGTGCATTTTTCAGCACTTAATTGCTGATTTATAGGAACCCAAAGCGGGTCACTCGACTGAGAAGGAGAACCCGACCAAGACCAATTCACTAGGTTGTGGCAATTACACAGAGCAATGGTTTGGCTAGTATTGGTCTAATCCGAACAGTCGTCTACAGCGGGCAGCTATAATCCCAATCATATGGGGTGGTGGTAGCAAAGCAAAATATAGGTAGTTATGATCGTTTACAAAAATAGACTTCACATAAAAGACTATTCAAATTGTACATTAGGGTCTCAAACACTGATTAGTTGGGGAAATAGTTCATTGGCAAAGACATCATCCCAAGGGCTGTCTGAGCACAGAGGGGAGGACATATTACTGAAGGGAGAAGGGGATCGTTCGTATCCGGAGTCGCTGTACGCATCTATCAGGCAAGATGACTTTTCGGGGTTGCTGGGAGACACCGAGGTGAGGAAGTCGTTGACCTTCAACTCCGAGATCAGCTCCACTTCCTCAGGCTCGTCCTTGACCTCCACGGGCTCCACTTCTACCACTTCCTCCACCGCCAAGGAAACCTCCTCAATCTTCACTTCGGGGATGCTCTCTTCGTTCTGCTCCACGCACACCACCTCTTCTAAAGGCTTCGTATAGATGTGGTCGAAGTGGATCAGTTCATTAATGGCTTCCAGCTTAACTGATGGGGACCCCACagatggagagggggaggcaggTACTGAATCCAGCCCGTCCTCTCCCAGCTGCGGCAGCTCCTTGGATTCCAAGTCGCTGCACTTGAGGAACATTTCTGGGTCAAGGATGTCCAGAATGCCAAGCAAGATATCAGACTGCGGAGAAAGAAGGGGCATCAGAATAGGAGAAGCAGAGAGGAACAAAACCAAACGAGGCATTGTATTAAAGCTTGATCATGTAATTGCTTGTAATCTTGACCAAGATATTTAAACGGGCACATGCAAGATAGTGTCCCTTTACTTTGCTAGTCAGACATACTGGCTGAGAGACTATTGATCTACAGCAATCAGGGATGATACCAATTCTCTTTATTGACTCACCCTTAGATAGCTTTGTTACCAGACCAAGCCGGCTCAATTACTGTCCTCCTCCATAGCTACTAGTTATCTGCTGCTGAACAGTCTTGCAAATTAGTTAAAAGATTAGAACGTCAAATTGTCCTTTCAGCATCATTTTCACACTGTGGTTCAGAGGCAGGGAAACTCACCTCAGTGTCTGTAGAGTTAGGACTGTCAGTATCCATGTGGAGTTCTTCAGATTTGGGGACGTCTGGGCCTGCACCTGCTGCGGAGGCACACGTAGCCTGAGTGCTGCGGACTCAGAAGACCCGGTCACCAAACTGACCTCATCCACCCTGGACTGCAATACCTGAACCTGCAGAGCAACACAGAAAAGAAAGGTGGGTTAAATACACACTCCAGAGTCTCAAAGTCCTTTCCCCCCCCACAAAGGATTAAACCACATCCCTGATCAGAACAGATTAAGCCAAGGACTGTACCTTCTCCTTGGCTTCTAGGGTGTCCAACCCCAGCCTCTGGCGCAGTTCCTCGTTTTCGGTTAACAACCCATGCGTCTTTTCACGCAATAGTCTGTTTTCAATGTGAAGTTTCTGATTCTGTGGGAGGATATTAAAACCATTTAGAATCCTTCCCTGCAATCTAATTCTGGCCTTTATTTACATTAGTGGATACCACACAGTTTATAGATCTAGAAACTTCAATCAAAAGATGTGGTGCAtgctcagattttttttttttttttttatgcagttcTACCTAGCACATATGCAATCATAACTTGGCATTTGCAACAACTTTATTCATGCATACAACAATTCAAATTGGGATTCGACCCATTAGGGTTTCACCAGTTCTGCATTGATTTAAACTAGAAATTGAAATTACCTCCAACTCAAGATCCAAAACCTGCTGCTCCAATTCACCCATTTTGGCCTTTTTTCGGTCTCTGGCGGTCTGGGCGGCTACTCTGTTTTTGAGTTTCCTGTACAAAGGGGGAACAGAGGGGTTGGTCATTCATTTTGCCGACAGACCTTGTTCTCCTGCTGCCGATCACACTTAAAGGGGCGGTTGCGCAACCCGCCGCCATGTTGCCACGCAGGCACAGCCGGATCCGCAAACCCCTCCGCTGTGTAAGCCGGGAGTCAGAGCCAGATCGTTACGGGAAATTGAGATGCGATCGCAAACAATAACTGATCGACAGCAGttgcaaataataatcaatatccTAGCGATACAAAATGCGTTGCCACATAGGATGGACTGAAAGAACACCGTAGACCATACAGTAGCGGCTGCACACCCTCCCCTTTAAGAACGTCACATTTTAGGATTCaccgtttaaaatacaatggGAGGAGGATTTAAAAagagtatatatacacattatgctGACCTCCGAAGTGCTTTTTCTTCGGGGCTCAAGTGTGTGAGCCGTTGCCTTTTCCGATGGGGCTGCCCGGATCCGTTTGAATCCGAATCGGAGGAAGCCGGAGTCCCGGATGACGGCAACATGACCGAAATGGACCGGCTGAAGCCCCCGTGAGAGCCGGCGGACGGTGCTGTCTGTTTCCCGGAGATTAACAGCACCTTGTGGGCGCCTCCCGCTCCTGCTGTCACAACCACCATGCCGTATCCCCCGGTGGATCTGAATCAGAGCCGCTGTCGATGAACTGGGGGTGAAATAATGTCACGGCTTGCTTTCTCCCCGCAGTTCCTCCTCCGCTGACAGCTACGCGATATTAAAAGCCAGTTCCTGTTGCCTGCCCTTTCTACTGTCGTGTAACGACCCGATTGGCCAGTAGGCGCGGTGACGTCAACACGGCCTGGCCAGCGATTGGCTACGCAGCTGATGAAATTTACATCACAGTGGCATCAGACGTGTTGACGAGGCTGAGGATGAAGTTGTTTTTGCCCGAGGAGGAGAGAGGTGCTTCCCAGGACTGTTTTAAAATCCGCCACCATCGCCAACTGCCTTGAAAGTCATTCTGGACTTTTTCAGCCAGGAAGAACAATGAGCTAAGAGTTTTCTCCATTTAGATCTGCGGGGATTTCGTTCCCAGTCCCCTCTGTTGAACAGTATGCCAGAGCACAGCAAATTCCCCTACAGattttgttttagttctaCTGCCAACCCCTCCAATCAATACACAAAGCCATGGAAAAGCATTCATTCGGTATGTCAAGGGTGGAGACTCTCACAGCAGGGATCATACTGACACAATGGCCCTGGGTGGAGTGGGGTGTGGGAATAAACACCTGGCACTGTCCGGCCTACAGGAGacaAAGATGCTGTGATTCATTATTTCCATGACCAGGCAGTGCCAGGGCCACAGAAACAAATGCCTTTCACAGAAGTGAAGCCCACAGACTTTGTTGAAGACTGTCGACAAGAGATGCCATTCTAAAGATTGTTACACAAAACCCGCTTTGTTGCACATGTAATAACTACAGttgaatgaaaaacatattcattataaaaatgaaaaatacacacgGGAAAAGGTGCAGCTGAATTCTGAGACagtaacaaattcaaataaaacatctttatactttgttgtaattaatattttcaaatgagtttcttaagaaatgtttattttagttttatttaagtGCAGTGATGTTTAATTGTGGAGGGTACGGAAGCTATTAAAGGATGTTAACACTCCCAGGGAATAACTGTAACTATCTCTCAGATTTTTTTCATACCATCCCATTTTATTTGCCgtctttttcatttccattttaaagacacaaataaGACACAACTTAACTATctattatttctgaaaatattaacTTGCATTGATTTTCGTTTGTCAGAAATGTTGATGGCCTACTGTTGAATTTATATGCCAGGTGTTTTTGAGGTCTGAATAGTTTTTAATAAAGTaggtaagaaaataaacaacataaaacaaacatacatcaCATGTGATTGATAAGATAATGACAATATAAGGTCATGCCTTTTATCCTGATGACAAAAAAGTCTTCCGCCTAGAAGATTAAGTAAATCAATTACACAATGTATAAGGTATCTGAGTTGACTGACAACAGAAAATGGGAACATTCCCCTTCAATCAGTAACATGATGAAATCCCCAGAGACTAGATCAGTATTGATCAGTCGGTCTAGAGGCAGCTGTTAGAAGAGCATCAAGGTATTTGCTGTTTTCAGTCTGTCGATAGTTTGGGCACTCATGTATTTCCAGTTACACATACAGCATAAAGGTgaaggcaaacaaaatatattagtaGAAATGATTACAAAGGTCATACGTTTACCCTACCATATGAAATcactgtattgttattattattataattatctaaTAATCTAAGTTTAAAAATCAAGTTTGCTTATTTGTGgatatgagaagaaaaaaaaaagcaaacaactaTGTAAAATGGCATTTACTTGCACAAATAGGTTACAGGTTAAAAACCATGCACAGACAGTTTGAAACacggatgttttatttttatgtgtttgtttattttactttacgaAAGGAAATGAGATCAGTTACGACTACTTCCCATTGCTAGGCGGCGAACATAACAGTATAAACCTCCAAGAAAACCAAAATCATATATAAACATCAATGCTCAAACAAACAATAGCTTACATGGGAGTAAGTTACAATCAGTTGTTTCTTGTTGGTCATTAATGCAGTTTGTActgtagaagaagaaaaatataattgataccGACACGTCCTATACGACACTCATTGGCTGTCCCATAACTTTTCATTAGTTGCCTACTACATATAGGCCTAATTGATTagttttgttgctgttgctctCTTTATTAATGGTTTATGCGCATCTAATACATCCTAATATATGCTAATTTGGTTGTATTCTACTTTTTAATCACAATGATCCCTTTTGGTCCCTTAtagcctttttttttgctgccctattacattttgtttgcttatgACACTTTTTGACTGTCCTGTACAATGctttgtctgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147623 lncRNA downstream 70829 17154002 ~ 17155261 (-) True G117809
TU147479 lncRNA downstream 929645 16294830 ~ 16296445 (-) True G117710
TU147400 lncRNA downstream 1201017 16022598 ~ 16025073 (-) True G117646
TU147288 lncRNA downstream 1707909 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 1707909 15516554 ~ 15518181 (-) False AMCG00018617
TU147680 lncRNA upstream 209863 17466134 ~ 17466434 (-) True G117853
TU147683 lncRNA upstream 258586 17514857 ~ 17515120 (-) True G117856
TU147721 lncRNA upstream 328480 17584751 ~ 17585098 (-) True G117888
TU147764 lncRNA upstream 478405 17734676 ~ 17736324 (-) True G117916
TU147781 lncRNA upstream 504279 17760550 ~ 17761560 (-) True G117933
AMCG00018653 mRNA downstream 1851 17179089 ~ 17224239 (-) True AMCG00018653
AMCG00018652 mRNA downstream 57974 17156220 ~ 17168116 (-) True AMCG00018652
AMCG00018650 mRNA downstream 155400 17068212 ~ 17070690 (-) True AMCG00018650
AMCG00018649 mRNA downstream 249007 16963043 ~ 16977083 (-) True AMCG00018649
AMCG00018651 mRNA downstream 302496 16912767 ~ 16923594 (-) True AMCG00018651
AMCG00018656 mRNA upstream 11318 17267589 ~ 17290539 (-) True AMCG00018656
AMCG00018658 mRNA upstream 41993 17298264 ~ 17304621 (-) True AMCG00018658
AMCG00018657 mRNA upstream 52872 17309143 ~ 17316875 (-) True AMCG00018657
AMCG00018661 mRNA upstream 260208 17516479 ~ 17529254 (-) True AMCG00018661
AMCG00018660 mRNA upstream 318566 17574837 ~ 17576935 (-) True AMCG00018660
TU147593 other downstream 216789 17008898 ~ 17009301 (-) True G117784
TU147284 other downstream 1707909 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 1709808 15498662 ~ 15516282 (-) False AMCG00018617
TU147067 other downstream 2487778 14736138 ~ 14738312 (-) True G117377
TU146918 other downstream 2705215 14503403 ~ 14520875 (-) True G117267
TU147734 other upstream 347085 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 1210097 18466368 ~ 18474245 (-) True G118075
TU148096 other upstream 1789411 19045682 ~ 19047577 (-) False AMCG00018723
TU148412 other upstream 2731403 19987674 ~ 19988168 (-) True G118434
TU148462 other upstream 2821817 20078088 ~ 20079882 (-) True G118477

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU88228 True 2735 lncRNA 0.46 2 NC_053117.1 30906356 ~ 30909470 (+)