RNA id: TU147680


Basic Information

Item Value
RNA id TU147680
length 301
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G117853
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17466134 ~ 17466434 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttgtccatgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtctttatacaggtaacgagctgagattaggagcagtccctttaagagagtgctcctaatctcagctcgttacctgtataaaagacacctgggagccagaaatcttgccgattgataggggatcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctggatttttttgttgttattctgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147623 lncRNA downstream 310873 17154002 ~ 17155261 (-) True G117809
TU147479 lncRNA downstream 1169689 16294830 ~ 16296445 (-) True G117710
TU147400 lncRNA downstream 1441061 16022598 ~ 16025073 (-) True G117646
TU147288 lncRNA downstream 1947953 15498662 ~ 15518181 (-) True AMCG00018617
TU147286 lncRNA downstream 1947953 15516554 ~ 15518181 (-) False AMCG00018617
TU147683 lncRNA upstream 48423 17514857 ~ 17515120 (-) True G117856
TU147721 lncRNA upstream 118317 17584751 ~ 17585098 (-) True G117888
TU147764 lncRNA upstream 268242 17734676 ~ 17736324 (-) True G117916
TU147781 lncRNA upstream 294116 17760550 ~ 17761560 (-) True G117933
TU147839 lncRNA upstream 398633 17865067 ~ 17866985 (-) True G117978
AMCG00018657 mRNA downstream 149259 17309143 ~ 17316875 (-) True AMCG00018657
AMCG00018658 mRNA downstream 161513 17298264 ~ 17304621 (-) True AMCG00018658
AMCG00018656 mRNA downstream 175595 17267589 ~ 17290539 (-) True AMCG00018656
AMCG00018653 mRNA downstream 241895 17179089 ~ 17224239 (-) True AMCG00018653
AMCG00018652 mRNA downstream 298018 17156220 ~ 17168116 (-) True AMCG00018652
AMCG00018661 mRNA upstream 50045 17516479 ~ 17529254 (-) True AMCG00018661
AMCG00018660 mRNA upstream 108403 17574837 ~ 17576935 (-) True AMCG00018660
AMCG00018664 mRNA upstream 127753 17594187 ~ 17600940 (-) True AMCG00018664
AMCG00018675 mRNA upstream 327131 17793565 ~ 17797572 (-) True AMCG00018675
AMCG00018677 mRNA upstream 339222 17805656 ~ 17805925 (-) True AMCG00018677
TU147639 other downstream 209863 17226090 ~ 17256271 (-) True G117823
TU147640 other downstream 209863 17226090 ~ 17256271 (-) False G117823
TU147593 other downstream 456833 17008898 ~ 17009301 (-) True G117784
TU147284 other downstream 1947953 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 1949852 15498662 ~ 15516282 (-) False AMCG00018617
TU147734 other upstream 136922 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 999934 18466368 ~ 18474245 (-) True G118075
TU148096 other upstream 1579248 19045682 ~ 19047577 (-) False AMCG00018723
TU148412 other upstream 2521240 19987674 ~ 19988168 (-) True G118434
TU148462 other upstream 2611654 20078088 ~ 20079882 (-) True G118477

Expression Profile