RNA id: TU147721


Basic Information

Item Value
RNA id TU147721
length 348
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G117888
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17584751 ~ 17585098 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agggccaaattgtgatggctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcctggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcagtgaaccggcgacagggtcatgggcggccaaggctcattgatgcacgtgggaagcgaaggctggcccgtgtggtccgatccaacagactgctgaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagctgcagaccagtcagggtgcccatgctgacccctgtccactgctg

Function

GO: NA

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147683 lncRNA downstream 69631 17514857 ~ 17515120 (-) True G117856
TU147680 lncRNA downstream 118317 17466134 ~ 17466434 (-) True G117853
TU147623 lncRNA downstream 429490 17154002 ~ 17155261 (-) True G117809
TU147479 lncRNA downstream 1288306 16294830 ~ 16296445 (-) True G117710
TU147400 lncRNA downstream 1559678 16022598 ~ 16025073 (-) True G117646
TU147764 lncRNA upstream 149578 17734676 ~ 17736324 (-) True G117916
TU147781 lncRNA upstream 175452 17760550 ~ 17761560 (-) True G117933
TU147839 lncRNA upstream 279969 17865067 ~ 17866985 (-) True G117978
TU147840 lncRNA upstream 279969 17865067 ~ 17866985 (-) False G117978
TU147865 lncRNA upstream 396731 17981829 ~ 18061544 (-) True G117994
AMCG00018660 mRNA downstream 7816 17574837 ~ 17576935 (-) True AMCG00018660
AMCG00018661 mRNA downstream 55497 17516479 ~ 17529254 (-) True AMCG00018661
AMCG00018657 mRNA downstream 267876 17309143 ~ 17316875 (-) True AMCG00018657
AMCG00018658 mRNA downstream 280130 17298264 ~ 17304621 (-) True AMCG00018658
AMCG00018656 mRNA downstream 294212 17267589 ~ 17290539 (-) True AMCG00018656
AMCG00018664 mRNA upstream 9089 17594187 ~ 17600940 (-) True AMCG00018664
AMCG00018675 mRNA upstream 208467 17793565 ~ 17797572 (-) True AMCG00018675
AMCG00018677 mRNA upstream 220558 17805656 ~ 17805925 (-) True AMCG00018677
AMCG00018674 mRNA upstream 238571 17823669 ~ 17832605 (-) True AMCG00018674
AMCG00018676 mRNA upstream 249297 17834395 ~ 17840136 (-) True AMCG00018676
TU147639 other downstream 328480 17226090 ~ 17256271 (-) True G117823
TU147640 other downstream 328480 17226090 ~ 17256271 (-) False G117823
TU147593 other downstream 575450 17008898 ~ 17009301 (-) True G117784
TU147284 other downstream 2066570 15498662 ~ 15518181 (-) False AMCG00018617
TU147734 other upstream 18258 17603356 ~ 17603848 (-) True G117899
TU147953 other upstream 881270 18466368 ~ 18474245 (-) True G118075
TU148096 other upstream 1460584 19045682 ~ 19047577 (-) False AMCG00018723
TU148412 other upstream 2402576 19987674 ~ 19988168 (-) True G118434
TU148462 other upstream 2492990 20078088 ~ 20079882 (-) True G118477

Expression Profile