RNA id: TU147734


Basic Information

Item Value
RNA id TU147734
length 493
RNA type TUCP
GC content 0.55
exon number 1
gene id G117899
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17603356 ~ 17603848 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtcgCTTTAGAAAAAAAACGCCAACGCGACCAAAAACAGCGCAAGCATCCACTCCCGAtcagatcaatcaatcaatccgaTCAGACAATGGTTTCAGAGAGGGTCCGCTTTAAAGAAGAAAACGCCAGTATTATGTGGAAGGCGACTCCATTGGAAGCGTCCTGTCTGGATCCCCTCTCGGAGCGGGACTGCTGTCATCGGCGCAGTCCAGGTAGTGGTGCTGATGCTGAGGGCTCGGGCAGACACAATATAGAGCAATTCAAGAGAAATCAAATTAGATCTCAGCCTTCGCCTCAGCTCCGTGCAGCGCTTGTAAGCTTCAATCGAGGTAATAACCGGGTGGCTCAGGCTGGCACAGTGGGCACAGACGAGGCGCCGTGCGGATGGCGTTCAGAGGCGCTGTGTGCATTGGGTGCAGGTGCTCCCCGTCTCCCGTGCCAGCAGCTGCATCCCGGCTCTCTCCCTCCACACCGACATGTTGCCTGTCAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147721 lncRNA downstream 18258 17584751 ~ 17585098 (-) True G117888
TU147683 lncRNA downstream 88236 17514857 ~ 17515120 (-) True G117856
TU147680 lncRNA downstream 136922 17466134 ~ 17466434 (-) True G117853
TU147623 lncRNA downstream 448095 17154002 ~ 17155261 (-) True G117809
TU147479 lncRNA downstream 1306911 16294830 ~ 16296445 (-) True G117710
TU147764 lncRNA upstream 130828 17734676 ~ 17736324 (-) True G117916
TU147781 lncRNA upstream 156702 17760550 ~ 17761560 (-) True G117933
TU147839 lncRNA upstream 261219 17865067 ~ 17866985 (-) True G117978
TU147840 lncRNA upstream 261219 17865067 ~ 17866985 (-) False G117978
TU147865 lncRNA upstream 377981 17981829 ~ 18061544 (-) True G117994
AMCG00018664 mRNA downstream 2416 17594187 ~ 17600940 (-) True AMCG00018664
AMCG00018660 mRNA downstream 26421 17574837 ~ 17576935 (-) True AMCG00018660
AMCG00018661 mRNA downstream 74102 17516479 ~ 17529254 (-) True AMCG00018661
AMCG00018657 mRNA downstream 286481 17309143 ~ 17316875 (-) True AMCG00018657
AMCG00018658 mRNA downstream 298735 17298264 ~ 17304621 (-) True AMCG00018658
AMCG00018675 mRNA upstream 189717 17793565 ~ 17797572 (-) True AMCG00018675
AMCG00018677 mRNA upstream 201808 17805656 ~ 17805925 (-) True AMCG00018677
AMCG00018674 mRNA upstream 219821 17823669 ~ 17832605 (-) True AMCG00018674
AMCG00018676 mRNA upstream 230547 17834395 ~ 17840136 (-) True AMCG00018676
AMCG00018680 mRNA upstream 369587 17973435 ~ 17978220 (-) True AMCG00018680
TU147639 other downstream 347085 17226090 ~ 17256271 (-) True G117823
TU147640 other downstream 347085 17226090 ~ 17256271 (-) False G117823
TU147593 other downstream 594055 17008898 ~ 17009301 (-) True G117784
TU147284 other downstream 2085175 15498662 ~ 15518181 (-) False AMCG00018617
TU147285 other downstream 2087074 15498662 ~ 15516282 (-) False AMCG00018617
TU147953 other upstream 862520 18466368 ~ 18474245 (-) True G118075
TU148096 other upstream 1441834 19045682 ~ 19047577 (-) False AMCG00018723
TU148412 other upstream 2383826 19987674 ~ 19988168 (-) True G118434
TU148462 other upstream 2474240 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 2840649 20444497 ~ 20457523 (-) False AMCG00018788

Expression Profile