RNA id: TU147764


Basic Information

Item Value
RNA id TU147764
length 403
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G117916
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17734676 ~ 17736324 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGTTCCTCAAGCACGTTGTTCACTTTAAGAGCTTCCCCAAGAGCCACAGCTCCATCCTTCCCAAATCCATTGTAAGACAAGTCTATCACACGAAGGAAAATGTTGGCCCCTAAACCTCTTGCCAGTGTGATCGATCCTCTTCCCCGCAAAGAGTTCCAGCTCAGGTTAAAAGTCTTCATTCCTGTGTTTTCAGCAATCGCGTTGCCTAACATCTCTCCTGCTCCGTCTCCCATCCGATTGTGACTCAGATCCAAGACTTCCACTTTCTGGTTGCTCACCAAAGCGTCAGCCAAGTGCTTTGCCGCATGGTCATCAAAACCGTTCCCAGAGAGGTTGATACTGACCAAAGTGGTGTTCTCCAGGAGCATGTTGCCAATGGCTTGGGCTCCTTTTCCTCCCAG

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147721 lncRNA downstream 149578 17584751 ~ 17585098 (-) True G117888
TU147683 lncRNA downstream 219556 17514857 ~ 17515120 (-) True G117856
TU147680 lncRNA downstream 268242 17466134 ~ 17466434 (-) True G117853
TU147623 lncRNA downstream 579415 17154002 ~ 17155261 (-) True G117809
TU147479 lncRNA downstream 1438231 16294830 ~ 16296445 (-) True G117710
TU147781 lncRNA upstream 24226 17760550 ~ 17761560 (-) True G117933
TU147839 lncRNA upstream 128743 17865067 ~ 17866985 (-) True G117978
TU147840 lncRNA upstream 128743 17865067 ~ 17866985 (-) False G117978
TU147865 lncRNA upstream 245505 17981829 ~ 18061544 (-) True G117994
TU147880 lncRNA upstream 563524 18299848 ~ 18300107 (-) True G118008
AMCG00018664 mRNA downstream 133736 17594187 ~ 17600940 (-) True AMCG00018664
AMCG00018660 mRNA downstream 157741 17574837 ~ 17576935 (-) True AMCG00018660
AMCG00018661 mRNA downstream 205422 17516479 ~ 17529254 (-) True AMCG00018661
AMCG00018657 mRNA downstream 417801 17309143 ~ 17316875 (-) True AMCG00018657
AMCG00018658 mRNA downstream 430055 17298264 ~ 17304621 (-) True AMCG00018658
AMCG00018675 mRNA upstream 57241 17793565 ~ 17797572 (-) True AMCG00018675
AMCG00018677 mRNA upstream 69332 17805656 ~ 17805925 (-) True AMCG00018677
AMCG00018674 mRNA upstream 87345 17823669 ~ 17832605 (-) True AMCG00018674
AMCG00018676 mRNA upstream 98071 17834395 ~ 17840136 (-) True AMCG00018676
AMCG00018680 mRNA upstream 237111 17973435 ~ 17978220 (-) True AMCG00018680
TU147734 other downstream 130828 17603356 ~ 17603848 (-) True G117899
TU147639 other downstream 478405 17226090 ~ 17256271 (-) True G117823
TU147640 other downstream 478405 17226090 ~ 17256271 (-) False G117823
TU147593 other downstream 725375 17008898 ~ 17009301 (-) True G117784
TU147284 other downstream 2216495 15498662 ~ 15518181 (-) False AMCG00018617
TU147953 other upstream 730044 18466368 ~ 18474245 (-) True G118075
TU148096 other upstream 1309358 19045682 ~ 19047577 (-) False AMCG00018723
TU148412 other upstream 2251350 19987674 ~ 19988168 (-) True G118434
TU148462 other upstream 2341764 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 2708173 20444497 ~ 20457523 (-) False AMCG00018788

Expression Profile