RNA id: TU147953


Basic Information

Item Value
RNA id TU147953
length 511
RNA type TUCP
GC content 0.43
exon number 2
gene id G118075
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18466368 ~ 18474245 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgttttgttccattgctatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcctttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagtgtggcatggttgttggtcggtcggccggtctgagtatttcacaatctgctcagttactgggattttcacgcacaaccatttctagggtttacaaagaatggtgtgaaaagggaaaaacatccagtatgcggcagtcctgtgggcgaaaatgccttgttgatgctagaggtcagaggagaatgggccgactgattcaagctgatagaagagcaactttgactgaaataaccactcgttACAAGGTAACGAGTTAcgaggtatgcagcaaagcatttgtgaagccacaacacGTACAACCTTGAGGCG

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147882 lncRNA downstream 152126 18313999 ~ 18314242 (-) True G118010
TU147880 lncRNA downstream 166261 18299848 ~ 18300107 (-) True G118008
TU147865 lncRNA downstream 404824 17981829 ~ 18061544 (-) True G117994
TU147839 lncRNA downstream 599383 17865067 ~ 17866985 (-) True G117978
TU147840 lncRNA downstream 599383 17865067 ~ 17866985 (-) False G117978
TU147958 lncRNA upstream 64199 18538444 ~ 18545559 (-) True AMCG00018687
TU147981 lncRNA upstream 178521 18652766 ~ 18659398 (-) True G118101
TU147980 lncRNA upstream 182220 18656465 ~ 18657534 (-) True G118100
TU148003 lncRNA upstream 258843 18733088 ~ 18733820 (-) True G118115
TU148005 lncRNA upstream 271137 18745382 ~ 18746820 (-) False AMCG00018703
AMCG00018683 mRNA downstream 445154 18001743 ~ 18021214 (-) True AMCG00018683
AMCG00018682 mRNA downstream 480604 17984479 ~ 17985764 (-) True AMCG00018682
AMCG00018684 mRNA downstream 482459 17982629 ~ 17983909 (-) True AMCG00018684
AMCG00018680 mRNA downstream 488148 17973435 ~ 17978220 (-) True AMCG00018680
AMCG00018676 mRNA downstream 626232 17834395 ~ 17840136 (-) True AMCG00018676
AMCG00018690 mRNA upstream 55177 18529422 ~ 18532311 (-) True AMCG00018690
AMCG00018689 mRNA upstream 61280 18535525 ~ 18535910 (-) True AMCG00018689
AMCG00018687 mRNA upstream 64173 18538418 ~ 18547368 (-) False AMCG00018687
AMCG00018688 mRNA upstream 83096 18557341 ~ 18562421 (-) True AMCG00018688
AMCG00018696 mRNA upstream 98897 18573142 ~ 18575337 (-) True AMCG00018696
TU147734 other downstream 862520 17603356 ~ 17603848 (-) True G117899
TU147639 other downstream 1210097 17226090 ~ 17256271 (-) True G117823
TU147640 other downstream 1210097 17226090 ~ 17256271 (-) False G117823
TU147593 other downstream 1457067 17008898 ~ 17009301 (-) True G117784
TU147284 other downstream 2948187 15498662 ~ 15518181 (-) False AMCG00018617
TU148096 other upstream 571437 19045682 ~ 19047577 (-) False AMCG00018723
TU148412 other upstream 1513429 19987674 ~ 19988168 (-) True G118434
TU148462 other upstream 1603843 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 1970252 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 2015966 20490211 ~ 20490738 (-) False AMCG00018790

Expression Profile